BAC Information

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BAC

Clone NameMSMg01-147N20
Chromosome10 (Build37)
Map Location 104,342,580 - 104,343,230
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147N20.T7 (MSMg01no147_n20.b1)MSMg01-147N20.TJ (MSMg01no147_n20.g1)
ACCAG351032AG351033
length738734
length of high quality
(start - end)		690 (49 - 738)653 (78 - 730)
definitionCHROMAT_FILE: MSMg01no147_n20.b1 PHD_FILE: MSMg01no147_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:34 2005CHROMAT_FILE: MSMg01no147_n20.g1 PHD_FILE: MSMg01no147_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACCAATGACTACCAAATGGCTGAGAAGCACCTAAAAGAA
TGTTCAACATCCCTAGTCATCAGGGAAATGCAAATCAAACCAACCCTGAG
ATTTCACCTCACACCATTCAGAATGGCTAAGGTAAAAAACCCAGGTGACA
GCAGATGCTGTCAAGGATGTGGAGAAAGAGGAACACTCCTCTGTTGCTGG
TGGGATTGCAAGTTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCT
CAGAAAATTGGACATAGTAGTATCCGGGGACCCAACAATACCACTCTTGG
ACAAGTACCCAGAAGATGCCCCAACATGTAATTATGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGTTGGAAAGAACTCAG
ATGGTCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATGTACATAA
TGGAGCACTACTCAGCTATTAAAAACAATGAATTTATAAAACTCTTAGGC
AAATGGATGTATCTGGAGGATATCATCCTGAATGAGGTAACCCAATCACA
AAAAAACACACATGATATGCACTCACTGATAAGTGGATATTAGCCAAGAA
GCCCAGAAGCTCAGAATATCCAAGATACAATTCACAAACCACATCAAACT
CAAGAAGAAAGAAGACCATAGTGTGGATACTTCTATCN

NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACCCAAACTCCCTTACAAAT
CTGAAGCAAAAATTAAGACATTCCCAGAGAAGAAAAACCCAAGAGACCTA
GCTGCTACCAAATGTTCTGAATAAATAAACTAAATTATTACATTCGGGCT
CAAATGAAGTATTTCATGGAAATTGAATCCATATAAATACATTTTTAAAA
CATACAAACTAATAATATCATTATGATAGCATAAACTTATTTTAATTTTA
TCTCAACTCTGTTTATTTTCACAGATAATGTGTTAACTGATGTTGATATG
AAAATTGTATTTAATAAATTTATATAATCATAGAAAGAGGGAGCAAATTC
TTATTGTATTTAGGGAAATGCCTTACTACTAAACTATTGCATAATATTTG
ATCACACACTGATCCCTAAGATGAAGTTATTTACTGAAGAAAAAAAAACT
GTTTCTAGTTACAGTGTGGCTCTGTCCTTAGCACACACACCTTTAGTCCC
ATGCAATGAGGATAAATTTAGTTTGTAGAAGGAAGCATCCATGTTTCTCT
AATTGGGTGCAGAGATCTAAGTGATCTCTAATTGGGTGGCAGACAAAGTG
ATGAATTGGGAGAAAATATGACACAATAGGATATGCCCAACTCTCAGATG
AACAGTGAGAAAAGAGGGGCCACTTAAGAGAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_n20.g1 MSMg01no147_n20.g1 CHROMAT_FILE:
MSMg01no147_n20.g1 PHD_FILE: MSMg01no147_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:35 2005
         (653 letters)



>mm_chr10_104342380_104343432
          Length = 1053

 Score = 1228 bits (635), Expect = 0.0
 Identities = 648/653 (99%), Gaps = 2/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtacccaaactcccttacaaatctgaagcaaaaattaagacattcccagagaagaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtacccaaactcccttacaaatctgaagcaaaaattaagacattcccagagaagaaaaa 260

                                                                       
Query: 61  cccaagagacctagctgctaccaaatgttctgaataaataaactaaattattacattcgg 120
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 261 cccaagagacctagctgctaccaaatgttctgaataaatagactaaattattacattcag 320

                                                                       
Query: 121 gctcaaatgaagtatttcatggaaattgaatccatataaatacatttttaaaacatacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcaaatgaagtatttcatggaaattgaatccatataaatacatttttaaaacatacaa 380

                                                                       
Query: 181 actaataatatcattatgatagcataaacttattttaattttatctcaactctgtttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaataatatcattatgatagcataaacttattttaattttatctcaactctgtttatt 440

                                                                       
Query: 241 ttcacagataatgtgttaactgatgttgatatgaaaattgtatttaataaatttatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcacagataatgtgttaactgatgttgatatgaaaattgtatttaataaatttatataa 500

                                                                       
Query: 301 tcatagaaagagggagcaaattcttattgtatttagggaaatgccttactactaaactat 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tcatagaaagagggagcaaattcttattgtatttagggaaatgtcttactactaaactat 560

                                                                       
Query: 361 tgcataatatttgatcacacactgatccctaagatgaagttatttactgaagaaaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 tgcataatatttgatcacacactgatccctaagatgaagttatttactgaagaaaaaaa- 619

                                                                       
Query: 421 actgtttctagttacagtgtggctctgtccttagcacacacacctttagtcccatgcaat 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 -ctgtttctagttacagtgtggctctgtccttagcacacacacctttagtcccatgcaat 678

                                                                       
Query: 481 gaggataaatttagtttgtagaaggaagcatccatgtttctctaattgggtgcagagatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaggataaatttagtttgtagaaggaagcatccatgtttctctaattgggtgcagagatc 738

                                                                       
Query: 541 taagtgatctctaattgggtggcagacaaagtgatgaattgggagaaaatatgacacaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 taagtgatctctaattgggtggcagacaaagtgatgaattgggagaaaatatgacacaat 798

                                                                
Query: 601 aggatatgcccaactctcagatgaacagtgagaaaagaggggccacttaagag 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aggatatgcccaactctcagatgaacagtgagaaaagaggggccacttaagag 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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