BAC Information

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BAC

Clone NameMSMg01-148K22
Chromosome10 (Build37)
Map Location 30,884,108 - 30,884,758
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
Downstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148K22.T7 (MSMg01no148_k22.b1)MSMg01-148K22.TJ (MSMg01no148_k22.g1)
ACCAG351608AG351609
length730735
length of high quality
(start - end)
655 (38 - 692)659 (75 - 733)
definitionCHROMAT_FILE: MSMg01no148_k22.b1 PHD_FILE: MSMg01no148_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:39 2005CHROMAT_FILE: MSMg01no148_k22.g1 PHD_FILE: MSMg01no148_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCCA
GCATGTATTACCAAAATACAAGAAAGGTGAAGAAAAATGAATTAGTAAAG
GTAGAGGTAGGGAGGTTTTAAATGATGACAAAATTAAATCATAAAAGGAC
AGTGATACCTTTGGATTAAGACAAAAGATGATATATGGGCTCCAGACAAA
GTATAGGAAACAGATATGATGTAGTTGTGATATGATTTTAAAGTGCCAGG
TAAACCTAGAATAATTTTCTCCAATATTCTCAAGCCATGGAAGAGATGAG
AGAGATGGAGTAATAAAATATTCATGGTCAAGGCTATCTCTGTTTTACTT
TCAAATCTCAGAAAACAGCAGATTGCAAATAATAGAGCAGCGACTCTTAG
GTTAATGCTTTAGCTTCACGAGCTGGTCCTGGGCAAGTGCAAACATGCCT
GGATAAATTTAGGCAGCTTTTAAAAATAGGATTATCTGGACTCAATCTCT
GGCAATTCCCATTCAGGAGATCTGGGGTAGAAACAAGAAACCTGAATTTT
TTCAAGTGGTTTCTAGCTGATTACAAGGTACTGCCTGAATTATAAGTCTT
AACAAGAAGCCAGAACCATTGAGGTCTGTTGGTAATGTCCATGCTTGATT
GGTGAGCCTATCTCAAAAAGGCTACACCTAAATGTTGAGTCTTTTGTTCT
TTTCCAGGCGGTCAGCTGACAAACAGGCAN
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGAAAATGAAGAGACTCATATCCAA
ACTGATGGGACACAATGAAAGCAGCGCTAAGAGGAAACTTCATAGCACTA
AGTGTCCTGGTAAAGAATTGCAGAGATCCTACACTAGCAGCTTAACAGCA
CACCTGAGAACTCTAGAACAAAAAGAAGTAAACACACTCAAGAGGAGTAG
ATGACAGGAAATAGTCAAATTCAGAGCTGAACTCAACAAAATAAAAACGA
AGAGGACTATAGAAAAAGTCAACAAAACCAAAAGCTGTTTCTTTGAGAAA
ATCAACTAACTAAAGGGACCAGAGGCATTACCCAAGTCAACAAAATCAGA
AATGAAAAGGGAGCCATAAGAGCAGAAACTGAGCAAATTTGAAAAATCAT
CAGATCCTACTTTAAAAGCTTATACTCAACAAAACTGGAAAATCCGATGA
AATGGATGATTTCCTAGACAGATACCACATATCAAAGTTAAATCAAGAGC
AGATAAACTATATAAATACAAGAAGTCATTAAAAAACCCCTAAAGCCAAA
AACAGCCCAGGACCAGATGGCTTTAGTGTAGAATTCTATCATACCTTCAA
AGAAGAGCTAATACCAGTATTCCTCANACTATTCCATAAAGTAGAAACAA
AAGGAACAGTACCTAATTCATTCTATGGAGCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_k22.b1 MSMg01no148_k22.b1 CHROMAT_FILE:
MSMg01no148_k22.b1 PHD_FILE: MSMg01no148_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:39 2005
         (655 letters)



>mm_chr10_30883903_30884958
          Length = 1056

 Score = 1158 bits (599), Expect = 0.0
 Identities = 638/651 (98%), Gaps = 1/651 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccagcatgtattaccaaaatacaagaaaggtgaagaaaaatgaattagtaaaggt 65
           |||||||| ||||||  || |||||||||||||||| ||||||||||||||| |||||||
Sbjct: 206 gaattccatcatgtagcactaaaatacaagaaaggtaaagaaaaatgaattaataaaggt 265

                                                                       
Query: 66  agaggtagggaggttttaaatgatgacaaaattaaatcataaaaggacagtgataccttt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agaggtagggaggttttaaatgatgacaaaattaaatcataaaaggacagtgataccttt 325

                                                                       
Query: 126 ggattaagacaaaagatgatatatgggctccagacaaagtataggaaacagatatgatgt 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 ggattaagacaaaagatgatatatgggctccagacaaagtataggaaacagatatgatat 385

                                                                       
Query: 186 agttgtgatatgattttaaagtgccaggtaaacctagaataattttctccaatattctca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agttgtgatatgattttaaagtgccaggtaaacctagaataattttctccaatattctca 445

                                                                       
Query: 246 agccatggaagagatgagagagatggagtaataaaatattcatggtcaaggctatctctg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agccatggaagagatgagagagatggagtaataaaatattcatggtcaaggctatctctg 505

                                                                       
Query: 306 ttttactttcaaatctcagaaaacagcagattgcaaataatagagcagcgactcttaggt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 506 ttttactttcaaatctcagaaaacagcagattgcaaataatagagcagcgactcttaggc 565

                                                                       
Query: 366 taatgctttagcttcacgagctggtcctgggcaagtgcaaacatgcctggataaatttag 425
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taatgctttagcttcaggagctggtcctgggcaagtgcaaacatgcctggataaatttag 625

                                                                       
Query: 426 gcagcttttaaaaataggattatctggactcaatctctggcaattcccattcaggagatc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gcagcttttaaaaataggattatctggactcaatctctggcaattcccattcaggagatc 685

                                                                       
Query: 486 tggggtagaaacaagaaacctgaattttttcaagtggtttctagctgattacaaggtact 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tggggtagaaacaagaaacctgaattttttcaagtggtttctagctgattacaaggtact 745

                                                                       
Query: 546 gcctgaattataagtcttaacaagaagccagaaccattgaggtctgttggtaatgtcc-a 604
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 746 gcctgaattataagtcttaacaagaagccagaaccattgaggtctgctggtaatgtccca 805

                                                              
Query: 605 tgcttgattggtgagcctatctcaaaaaggctacacctaaatgttgagtct 655
           ||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 806 tgcttgattggtgggcctatctcaaaaagactacacctaaatgttgagtct 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space:   674670
Effective search space used:   674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)