BAC Information

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BAC

Clone NameMSMg01-149I08
Chromosome10 (Build37)
Map Location 126,644,589 - 126,645,080
singlet/doubletsinglet
Overlap genePip5k2c
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3
Downstream geneKif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149I08.T7 (MSMg01no149_i08.b1)MSMg01-149I08.TJ (MSMg01no149_i08.g1)
ACCAG352217AG352218
length702706
length of high quality
(start - end)
531 (45 - 575)492 (75 - 566)
definitionCHROMAT_FILE: MSMg01no149_i08.b1 PHD_FILE: MSMg01no149_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:49 2005CHROMAT_FILE: MSMg01no149_i08.g1 PHD_FILE: MSMg01no149_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAGATCCGCGG
AATTCCAGGACTGTCTCGGACTATACAGAGAAACACTGTCTCAAAAAAAA
AAAAAATGGTGTCTGACTATGTAGACCTGGCTAACCTGGAGCTCACTCTG
TTGACCAGACTGGCCTCAAACTCACAGAAATCTGCCTGCCTCTGCTATCT
GGGTGCTGGGGTTAAACCCACCACACCAGCCTAGCCCTTGAATTTTTAGG
AAGGGTCTTGCTATGTGGCTCAGGACTGAAGAAACCACTCGCTCAGCAGT
TAAAAGCATTGGCCGTTCAGTTCCCACGTAGTGGCTTTTCATCACCCTTT
GTAACTTCAGTTCCAGAAATCCAACACTCTCTTCTGACCTCTATGGGGCA
CCAAGTACTCATGTGGTGCAGACACTCACATGCAATCGAAACATCTATAC
ACATAGCACTTATCCTAAGGAGGAAAATATTATTTTGAGATAGGGTTGCA
CGTAGCCCAGGCTGGCCTTGAACTGACTATGTAGGTGAAAATGACCTTTA
ACTCCTGATGCTTCTGTACCCCAAGTTTTGAAACTCTAGGCTTATACAGT
GCCTGGCTTTCCTAATTTTATAAACGTGTGTGAGTGTACTTGAGTGCTGG
AAACCAAACCCTGACCTTCTGCAAGAACAAACGCTCTTAACCAGTGAGCC
CT
NCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTCGTCTACAGAGTGAG
TTCCAGGACAGCCAGTGCTATATAGAAAAAACCCTGTCTCAAAAAAACCA
ACCAACCAAATAAATAAAATTGGCGGTATTTACTGATATTTTGAATGGCA
TCATCTTGTTTTAGAAGGCCTCTAGAGGTCACAATTTTTTGGTTACGGAA
TCCCTACCAAAAGCTAATGACAAAGCTTCTGCATGCATTATTACTGGATG
GAATAGACTAGAAGAAAGGGAGTAGGTGTATATACAAGAATGCAGGTAAC
TTTGGAAATATTTAAATTTAAAATTTTAATTAATTAATTGGTTATTTTTG
AGACAGGGTCTCCCTATGTAGTCTATGTAGGCCAGTAGCTCAATATGCAC
ACCAGGCTGCCTGGAACTCAGAGATCTATCCACCCGCCTCTGCCTCCCAA
GTGCTGGGATTTTACAGGTGTGCATCACCACACCCAGGTATCTACTCATG
TGTGTGTGTGCGTGGTGTGTGCCATGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGCGTGTGATAACCCATACTCCCTTTATCCAATTTTCCCAATTCCACT
CCCCCTTCTTCCTTCTCCTTCTTTTCACCCTCACCCCTTTTTCTTTCTCT
CCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_i08.g1 MSMg01no149_i08.g1 CHROMAT_FILE:
MSMg01no149_i08.g1 PHD_FILE: MSMg01no149_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:49 2005
         (492 letters)



>mm_chr10_126644389_126645280
          Length = 892

 Score =  928 bits (480), Expect = 0.0
 Identities = 489/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagcctcgtctacagagtgagttccaggacagccagtgctatatagaaaaaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagcctcgtctacagagtgagttccaggacagccagtgctatatagaaaaaaccc 260

                                                                       
Query: 61  tgtctcaaaaaaaccaaccaaccaaataaataaaattggcggtatttactgatattttga 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tgtctcaaaaaaaccaaccaaccaaataaataaaattggtggtatttactgatattttga 320

                                                                       
Query: 121 atggcatcatcttgttttagaaggcctctagaggtcacaattttttggttacggaatccc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcatcatcttgtattagaaggcctctagaggtcacaattttttggttacggaatccc 380

                                                                       
Query: 181 taccaaaagctaatgacaaagcttctgcatgcattattactggatggaatagactagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccaaaagctaatgacaaagcttctgcatgcattattactggatggaatagactagaag 440

                                                                       
Query: 241 aaagggagtaggtgtatatacaagaatgcaggtaactttggaaatatttaaatttaaaat 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagggagtaggtgcatatacaagaatgcaggtaactttggaaatatttaaatttaaaat 500

                                                                       
Query: 301 tttaattaattaattggttatttttgagacagggtctccctatgtagtctatgtaggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaattaattaattggttatttttgagacagggtctccctatgtagtctatgtaggcca 560

                                                                       
Query: 361 gtagctcaatatgcacaccaggctgcctggaactcagagatctatccacccgcctctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagctcaatatgcacaccaggctgcctggaactcagagatctatccacccgcctctgcc 620

                                                                       
Query: 421 tcccaagtgctgggattttacaggtgtgcatcaccacacccaggtatctactcatgtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccaagtgctgggattttacaggtgtgcatcaccacacccaggtatctactcatgtgtg 680

                       
Query: 481 tgtgtgcgtggt 492
           ||||||||||||
Sbjct: 681 tgtgtgcgtggt 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)