BAC Information

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BAC

Clone NameMSMg01-150K07
Chromosome10 (Build37)
Map Location 104,397,824 - 104,398,192
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150K07.T7 (MSMg01no150_k07.b1)MSMg01-150K07.TJ (MSMg01no150_k07.g1)
ACCAG353023AG353024
length730723
length of high quality
(start - end)
372 (45 - 416)341 (77 - 417)
definitionCHROMAT_FILE: MSMg01no150_k07.b1 PHD_FILE: MSMg01no150_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:15 2005CHROMAT_FILE: MSMg01no150_k07.g1 PHD_FILE: MSMg01no150_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACAGTATATAATTTGTACCGTGATTTCATAGAGTAGGAGGTACCACCTG
CCTTCTTCCAACCCAACTTACATAAATGTGTACATAAACTTCTGCTTCAA
AACAGAAAATAAACTAGCTATGCTCATGGGATAAAAGGGTTTGTTACTGT
ATTTCACAATAGTATCTATTTGATTCTGTATATATTTATTGCTGCATATA
AAAACCAAGTCTGATATTTAACATTAACTTGAGCTGTGACAAATATATAG
CTGTGATGTGGGATATATCCTCAGGTACTTATGCCCAGAATACCGTGGAG
AGTGTTGAGTTGAATATTCTTTAAATTATGACATTATATTCTAAAGAAAT
CTTTTTTAAATTTACCCACCCTAATTACTTTTAAATTTTATTGCATTTTT
TCGCGTTTGCTTGTTTGCTTGCTTTTTTTGACACAGGATTCCCGCATGCC
TCCCCGCCTGTCCTGCAACTCCCTTTGCACATCAGGTTGCCTTCCAACTC
CCAATTCCCCCTGTCTCTGCCCTACTCCCCTGATTACCCCCGCGCCCCCC
CCGTCCCACCCCCTTTTATCCCCCCCCCCCTCCCCCTTTTATCCCCCCCT
TGTTTTTCTTCTCCCCCCCCTTTGCTCTTCTGCATTGCCTTCCCCCTCCG
TTCCCCGACCCTCCCTCCGCCCCCTTCAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCCTTCCAAGACTTTTATCA
TGAATGGGTGTTGGATCTTGTTGAATGCTTTTTCTGCATCTAACGAGATG
ATCATGTAGTTTTTGTCTTTGAGTTTGTTTATATAATAAATTACATTGTT
GGATATTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGGACGATTGCTTCAATGTGTTCTTGGATTCGGTTAGCAAGA
ATTTTATTGAGGATTTTTGCATCAATATTCATAAGGGAAATTGGTCTGAA
GTTATCTATCTTTGTTGGATGTTTCTGTGGTTTAGGTATCAGAGTAATTG
TGGCTTCATAGAATGACCCCCCCAGACTTCCCTCTACTTCTATTTTGTGG
AATAGTTTGTACAGAACTGGGATTAAATCTTCTTTGAAGGTCTGGCACAA
CTCTGCACTAAATCCATCTGATCTTGCGCTTTTTTTGGCTGGGAGACTAT
TACTGACTGCTTCTATTTCCTTAGGAGATACGGCACTGTTTAGACTGTTA
ACCTCGCTCTGACTTACCCTTGTTACCCGCTATCTGTCTAGAAACCTGTC
CATTTTCTCCAGGTTTTCCAGTTTCGTTTACACATATCCTTTTTCAGAAG
CATCCGATTCCCCTCCTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_k07.b1 MSMg01no150_k07.b1 CHROMAT_FILE:
MSMg01no150_k07.b1 PHD_FILE: MSMg01no150_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:15 2005
         (372 letters)



>mm_chr10_104397624_104398394
          Length = 771

 Score =  677 bits (350), Expect = 0.0
 Identities = 365/370 (98%), Gaps = 1/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattccacagtatataatttgtaccgtgatttcatagagtaggaggtaccacctgcctt 60
           ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 569 gaattccacagtataaaatttgttccgtgatttcatagagtaggaggtaccacc-gcctt 511

                                                                       
Query: 61  cttccaacccaacttacataaatgtgtacataaacttctgcttcaaaacagaaaataaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cttccaacccaacttacataaatgtgtacataaacttctgcttcaaaacagaaaataaac 451

                                                                       
Query: 121 tagctatgctcatgggataaaagggtttgttactgtatttcacaatagtatctatttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tagctatgctcatgggataaaagggtttgttactgtatttcacaatagtatctatttgat 391

                                                                       
Query: 181 tctgtatatatttattgctgcatataaaaaccaagtctgatatttaacattaacttgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tctgtatatatttattgctgcatataaaaaccaagtctgatatttaacattaacttgagc 331

                                                                       
Query: 241 tgtgacaaatatatagctgtgatgtgggatatatcctcaggtacttatgcccagaatacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 330 tgtgacaaatatatagctgtgatgtgggatatatcctcaggtacttatgcccagaatgcc 271

                                                                       
Query: 301 gtggagagtgttgagttgaatattctttaaattatgacattatattctaaagaaatcttt 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtggagagtgttgagttggatattctttaaattatgacattatattctaaagaaatcttt 211

                     
Query: 361 tttaaattta 370
           ||||||||||
Sbjct: 210 tttaaattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 771
Length adjustment: 9
Effective length of query: 363
Effective length of database: 762
Effective search space:   276606
Effective search space used:   276606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)