BAC Information

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BAC

Clone NameMSMg01-151B08
Chromosome10 (Build37)
Map Location 34,048,313 - 34,048,549
singlet/doubletsinglet
Overlap geneNt5dc1
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4
Downstream geneCol10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151B08.T7 (MSMg01no151_b08.b1)MSMg01-151B08.TJ (MSMg01no151_b08.g1)
ACCAG353345AG353346
length723724
length of high quality
(start - end)
319 (324 - 642)647 (76 - 722)
definitionCHROMAT_FILE: MSMg01no151_b08.b1 PHD_FILE: MSMg01no151_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:48 2005CHROMAT_FILE: MSMg01no151_b08.g1 PHD_FILE: MSMg01no151_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXNAATCGNGAGNGGCGCG
GAATTCATTCCCTGCCTTAAAACACCACCCCTCTTAGCTGGTATTTTCTG
TGTGGAAATGGAATGAAAGGTACAATTTCAAAAAGCTGACTTGAAAGAAT
AAAAGTTTAGCTCTCTTATGTTAAAAACTTGGTTGCTATAGCATTCTGGA
AAAACCTGCCAGGGTGGAATGCTGGAACAGTCTGCTGTGGAGAAGTGGCC
TGCTGGGATTGGAAAGGTTGGGAGACCTCTCGTGGCCAGAGAAAAGTGGT
ACAACTTAATACTGATTCATCNTTAGTTCAACAGACACATGTGCCACATC
AGTAATGCTAACATCCCTGGCCAACAAACACCACTCAGCTATCACCATTG
TTCCTGTGATGGGGTAAGACCTGCCAGAGCTGTGAAGGGTCCTGGGGATG
CTGGGATGCCAACACCTCCACCACCAGCCTCCAACCTGTTGCTGCTGCCA
TTGCAGAACAAAACTGAGGACACTGAAGTTACCAACTCTACCAGTATGTC
GGTAAAACGCTAAAAACGCTTGTCTATGAAAGACAGAGATATTTACTGGA
GAATGAAAGAGGCAAATTTCTTTTGCGTATTTTATATAGAGCATAGGATA
TTATACAGTCTCTCTGTAGATTGAGCTGCTCTAATGACTCATTGTTCAGN
AAACACATATGGATGAATGAGAT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATATTACCTATTCAGTAA
CACTCAAATTTACTTCTAGTGGGGACAGTAAAAATAATCAGGCAATACAA
TTTAGTTGAATAGAGCTAGAAAGCTCAGGGCTAGTCTACATAGTAATTAC
TTAGCACAATAGCCGAGTCATACCCAAACACAGGAATACACAATGGCCTA
GGAAATAGGTGGGTTGTAGTATTATTCATGAAAGGGTTAGTAGAATGGAA
TTCCCCTGGTGCAGGTTTTTTCACTAGGCCAAGAGGAATAGCATAATCAT
GTATTGACTAAAGAACCCCTGGTGGTGGGTTTAACAATGGACTAGCATTG
TATCAGAGCATTCACCTGCCCCCTGTGTTTAGCTGATCTTAATTAGAGTT
GTTCCTATTCTCAGTTGTAAACAAGGCCTGGCTCCAGCCATCTTTTTATG
TATACATTTTCTTTGTTTTGTGTTAAGAACCAAAGTACCTTGATGGATGT
ATTCACCTAGCCTTCTTGTTTTTCTTCTGTATTAAAAGCCTGGTGTTTGC
TTGAAAAACATTACATCCAAATACAGCACTCTCTTGTGTCTGTGTCCATT
TGTCACCTTTTTCATCTTCTCCATACCCACCTGTAACAGGAACCCTGAAA
TTTTTTCCGAGGATTGAGAGAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_b08.b1 MSMg01no151_b08.b1 CHROMAT_FILE:
MSMg01no151_b08.b1 PHD_FILE: MSMg01no151_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:48 2005
         (319 letters)



>mm_chr10_34048109_34048827
          Length = 719

 Score =  420 bits (217), Expect = e-122
 Identities = 232/237 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   tcaacagacacatgtgccacatcagtaatgctaacatccctggccaacaaacaccactca 64
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 tcaacagacacgtgtgccacatcagtaatgctaacatccctggtcaacaaacaccactca 264

                                                                       
Query: 65  gctatcaccattgttcctgtgatggggtaagacctgccagagctgtgaagggtcctgggg 124
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 265 gctatcaccattgttcctgtgatggggtaagagctggcagagctgtgaagggtcctgggg 324

                                                                       
Query: 125 atgctgggatgccaacacctccaccaccagcctccaacctgttgctgctgccattgcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgctgggatgccaacacctccaccaccagcctccaacctgttgctgctgccattgcaga 384

                                                                    
Query: 185 acaaaactgaggacactgaagttaccaactctaccagtatgtcggtaaaacgctaaa 241
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 acaaaactgaggacactgaagttaccaactctaccagtatgttggtaaaacgctaaa 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)