BAC Information

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BAC

Clone NameMSMg01-151H14
Chromosome10 (Build37)
Map Location 6,387,076 - 6,387,290
singlet/doubletsinglet
Overlap genePlekhg1
Upstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l
Downstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151H14.T7 (MSMg01no151_h14.b1)MSMg01-151H14.TJ (MSMg01no151_h14.g1)
ACCAG353629AG353630
length778765
length of high quality
(start - end)
404 (46 - 449)215 (76 - 290)
definitionCHROMAT_FILE: MSMg01no151_h14.b1 PHD_FILE: MSMg01no151_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:17 2005CHROMAT_FILE: MSMg01no151_h14.g1 PHD_FILE: MSMg01no151_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTAGTATCCATTTCTTTCTTTTTTTTAGTTACCCTTTCTTCTTC
TCCTTTCTAAGCGTTACAGTACCTCCTCATACATTTGTTTACACATATAC
ATGTATACATTACATATACATGTATACATTACATATACGTATACATGTAT
ACATTACATACACATATACATGTATACATTACATATACATGTATACATTA
CATATATATATATACATGTATACATTATAGGCTAGGATTCACATGCGAGG
AAATGTAGGGTTTCTTTCTGAAATTGGATGACCTCAGTTAGCTTTATATA
TTCTAAATCCATCCAAAATTTTCCTGCAAATTTTGTGATTTCATTTTTCT
TTGAATCTAGAAATGACCACACCCTCCCCCGTCCTGTGTGTGTGTGTGAG
TGTCCTTCATTAAACAAAAATAAACCCACTCCCCCTAAATATCGCTAGAC
ACTTTCATTAAAGAATATTCCTCATTCTTCTTATTTGCCCTTTTTTTTTC
CCCCTATATTCCTTATTATATACCTCCTTTACTCCCCCCCTTCCTCCCCT
TCTTTTTTCATATTTCCTATCTTCCTTTATCTATTGCCTTTTTCTCTTAC
TATCTTACTTACCACCATTACTCCCATCTTATATTATTCCACCCTCCTTT
TCCCCTAACATGTATATTTCCTCCCTTTCTCTCTTTCTTCTATTTGTTAT
CCACTATTCACCTTTATTTTCTCTTTTT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTATGATTAAAATTCAAATAA
AAGTTGATTTCCGTGTGATGATCAAAGAGACCAGAATGCATTTCTTTGTC
TCCTGATAATGCTAAGTCGTTTACATCTTCTTTCCAATGCTTGTCTTGCC
AAACAGGTCGTTCTATAGTTACAGGAAGCGACTTCAGGGGGAGTCTGGGG
GCAGGAATAGGTGGCAGTGGGAGCAGTTGTGTGGTAGTAATTTCAGTCAA
TGGTGGAGACCAGGCTATTGTTTCCCAGATCCAGAGAAAACATACTATTA
AAATTTCTGATGATGATAATGATGATGATGGAGGTGCGAGCCGATAATTA
ATACACTTGTTTCACCCCCCCCCTTTTTGTCTTATTTATGATAGCCAGAA
GCTGTATATAAACTGCATGTCCCTCTCCAAAAGAACGGATACCGAAAATT
TGTNACATTTATTCGCTGAACTACCACTCACCTATTATTATGTCTGAATT
CTCCACATTCCCTATCTTTATTGCTAGATTCTGTTGTTAATCTATTCTTT
GGTGTTTATTCTTTATTTCCGTTCAATATTTCCCCTGGTTATGCTATCTT
CTTTGTATTACCCGAATTTCCCCCCTATTACATTTCTTTAACGCTCTCGA
TCACCTAACTACCGTTACCTCTACATTTTTCTCTTCATTTTTTGTTACCA
CTTTATTTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_h14.g1 MSMg01no151_h14.g1 CHROMAT_FILE:
MSMg01no151_h14.g1 PHD_FILE: MSMg01no151_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:17 2005
         (215 letters)



>mm_chr10_6386876_6387490
          Length = 615

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttttatgattaaaattcaaataaaagttgatttccgtgtgatgatcaaagagaccaga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttttttataattaaaattcaaataaaagttgatttccgtgtgatgatcaaagagaccaga 356

                                                                       
Query: 61  atgcatttctttgtctcctgataatgctaagtcgtttacatcttctttccaatgcttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atgcatttctttgtctcctgataatgctaagtcgtttacatcttctttccaatgcttgtc 296

                                                                       
Query: 121 ttgccaaacaggtcgttctatagttacaggaagcgacttcagggggagtctgggggcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttgccaaacaggtcgttctatagttacaggaagcgacttcagggggagtctgggggcagg 236

                                              
Query: 181 aataggtggcagtgggagcagttgtgtggtagtaa 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 aataggtggcagtgggagcagttgtgtggtagtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)