BAC Information

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BAC

Clone NameMSMg01-151I20
Chromosome10 (Build37)
Map Location 87,594,692 - 87,750,456
singlet/doubletdoublet
Overlap gene4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000
Upstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch
Downstream gene1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I20.T7 (MSMg01no151_i20.b1)MSMg01-151I20.TJ (MSMg01no151_i20.g1)
ACCAG353686AG353687
length755737
length of high quality
(start - end)
222 (72 - 293)198 (74 - 271)
definitionCHROMAT_FILE: MSMg01no151_i20.b1 PHD_FILE: MSMg01no151_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:23 2005CHROMAT_FILE: MSMg01no151_i20.g1 PHD_FILE: MSMg01no151_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,750,235 - 87,750,456)(87,594,692 - 87,594,889)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGCACCGCGGAAT
TCCTCATGGATCGCATGCTTGTGATTGTGAAGTCGGGACAAAGAACCAGA
AAGAATTTTACTTCTATAAACAAAACAGATTTCAGAAGACTTCACTTTGA
AAAGTCAAATCGTATATGAGAGCAGAGGAAAAAGAAGCCTAATATAATAG
AAGCCTTCCAAAGCCTGGGTCAGCAGCACAATAGCGGACTAGCACAAACA
AGGGCTAGGCCGTCACATGAGGCCAATGGGAAAGGAAATTCACTTGTACT
CAGATAGCACAGGCGGGTGGAGAATACGAGCCAGACGCCACAGTCCAGGA
GTAGGGGCGGCAGCTCATGGTAAGAGGGGCCGGTGGAGGGCGGTGCAGAA
TGGAGTAAGTAGCCCCCCCCACACGCTCACATCATAAACAACAGGCTATT
CATATCACATCCCTAACACCTGCATAATGACCCCCGCTTATATTATCCTC
CAACCAATTGTTCCACGCTCAAATTTCTGTGTCCTAGCTGGTGACCCACC
ATCCCTTTCTTTGCCTGTCTCCTTTTCCTGTCTTTTGCAAAACCCCACCC
CCCCCCTACATCCCCTCTACTTCCCCCCAAAACCCTCTGATCGTCCCGCC
CTCACCCTGATGCTCCGCCACTCCCTTTTCCGCCCTGGATGCCCCCCTCC
CCCCTTCCCTTTCCTCGCCCCCCTCTTCCCCCCTCTTTCCTTTCCCCTCC
CCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTATTTCCTAATATGAAATATTCCTAA
AGTGAAATATCCCATATAGGTCATGAAGTTATTTCTTAGAAAATATTAAC
ACTAAATCTCACAACTTTTTATGAGAGATACAACAAACGCAGGGACAGGT
TAAAGAACAGCAGAGCATTAAGTAGACAAAGGAAGAAAAAAAATTAGGGA
GTCCTTAAAGATTAAACCATCAACAGAGCCACATGACTATTTTAGGAACA
CACGGAGACATTAGACATTGCGCTTATCCTTTTTGTTTTTTCCCAAAAAT
GCATGCTGAAGAATTTCAGGCATACACATGGCACAGGAGTTTGATAATCT
TTAAATAAGACAGAAAAAGACCCCCCCACAAAAAAAATTTTTAAAGTGCA
TTAGTAAATCCAGGAAGAACGTACGCACTTAGTCAGAGGCGACGACGCGA
TCCGCTCTTTAAGGCGTAACTTGTTTAGTACCCGCCTTTCAGAAGACTCA
GCAATGGTCCTTGAAATCGAAGACCGCGATTTCATCAAATGTGCTAACTC
CTCCTGGAGTACACTGTCCTGCACTAAGGATTCCCCAACTACCTCAACAC
AGTTCCACCGATTTTTGCCACCCTTCCCTGGTTCCCTCACCACCGCGTGA
TTCTTATCACCCCACTAAAACTCCTATTACCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i20.b1 MSMg01no151_i20.b1 CHROMAT_FILE:
MSMg01no151_i20.b1 PHD_FILE: MSMg01no151_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:23 2005
         (222 letters)



>mm_chr10_87750035_87750656
          Length = 622

 Score =  398 bits (206), Expect = e-115
 Identities = 218/222 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattgtgaagtcgggacaaagaaccagaaagaattttacttctataaacaaaacagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgattgtgaagtcgggacaaagaaccagaaagaattttacttctataaacaaaacagatt 363

                                                                       
Query: 61  tcagaagacttcactttgaaaagtcaaatcgtatatgagagcagaggaaaaagaagccta 120
           | ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 362 ttagaagacttcactttgaaaagtcaaattgtatatgagagcagagaaaaaagaagccta 303

                                                                       
Query: 121 atataatagaagccttccaaagcctgggtcagcagcacaatagcggactagcacaaacaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atataatagaagtcttccaaagcctgggtcagcagcacaatagcggactagcacaaacaa 243

                                                     
Query: 181 gggctaggccgtcacatgaggccaatgggaaaggaaattcac 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gggctaggccgtcacatgaggccaatgggaaaggaaattcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no151_i20.g1 MSMg01no151_i20.g1 CHROMAT_FILE:
MSMg01no151_i20.g1 PHD_FILE: MSMg01no151_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:23 2005
         (198 letters)



>mm_chr10_87594492_87595089
          Length = 598

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatttcctaatatgaaatattcctaaagtgaaatatcccatataggtcatgaagttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttcctaatatgaaatattcctaaagtgaaatatcccatataggtcatgaagttatt 260

                                                                       
Query: 61  tcttagaaaatattaacactaaatctcacaactttttatgagagatacaacaaacgcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttagaaaatattaacactaaatctcacaactttttatgagagatacaacaaacgcagg 320

                                                                       
Query: 121 gacaggttaaagaacagcagagcattaagtagacaaaggaagaaaaaaaattagggagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaggttaaagaacagcagagcattaagtagacaaaggaagaaaaaaaattagggagtc 380

                             
Query: 181 cttaaagattaaaccatc 198
           ||||||||||||||||||
Sbjct: 381 cttaaagattaaaccatc 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)