Query= MSMg01no152_b21.b1 MSMg01no152_b21.b1 CHROMAT_FILE:
MSMg01no152_b21.b1 PHD_FILE: MSMg01no152_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:08 2005
(489 letters)
>mm_chr10_39181320_39182206
Length = 887
Score = 859 bits (444), Expect = 0.0
Identities = 475/486 (97%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 5 gaattctctgtaccatatgctacacatcttcatattttttatttttgtggtagtcagcta 64
||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 205 gaattctctgtaccatatgatacacatcttcatatgtttgatttttgtggtagtcagcta 264
Query: 65 gattttattgtaatagcagattgtactacacattttctctcttgcctttagggatcagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 gattttattgtaatagcagattgtactacacattttctctcttgcctttagggatcaaaa 324
Query: 125 ggggtaacttctgcagagcgcttcttataacctagtgtctcctggcctccttgcatgtag 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 ggggtaacttctgcagagcgcttcttataacctagtgtctcatggcctccttgcatgtag 384
Query: 185 gatttcttttgcttgcttcttgcacacacttcagatgactgatgtaacttgcaaaggtca 244
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatttcttttgcttgtttctt--acacacttcagatgactgatgtaacttgcaaaggtca 442
Query: 245 cacagccagtgaagtggggctcacatcaagccacttctctccatcatggctccatgccca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cacagccagtgaagtggggctcacatcaagccacttctctccatcatggctccatgccca 502
Query: 305 ggatccccactggctgtttcccattgtgcagtacctgcctcaggctgcagatgctgccag 364
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agatctccactggctgtttcccattgtgcagtacctgcctcaggctgcagatgctgccag 562
Query: 365 tctgggaaggtccccaaactgctggggagatgcaagaccctcacttttgaaaggagcaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctgggaaggtccccaaactgctggggagatgcaagaccctcacttttgaaaggagcaga 622
Query: 425 tggtgttagagt-cagatgagcagctggaagtctgggtctgggcgtgccctgtcctgact 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggtgttagagttcagatgagcagctggaagtctgggtctgggcgtgccctgtcctgact 682
Query: 484 taggta 489
||||||
Sbjct: 683 taggta 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 887
Length adjustment: 10
Effective length of query: 479
Effective length of database: 877
Effective search space: 420083
Effective search space used: 420083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_b21.g1 MSMg01no152_b21.g1 CHROMAT_FILE:
MSMg01no152_b21.g1 PHD_FILE: MSMg01no152_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:08 2005
(489 letters)
>mm_chr10_39268625_39269513
Length = 889
Score = 837 bits (433), Expect = 0.0
Identities = 445/449 (99%)
Strand = Plus / Minus
Query: 1 tcttgttcataaataaatgaatggatggacagatattaaatacatcctcacttagagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcttgttcataaataaatgaatggatggacagatattaaatacatcctcacttagagcaa 390
Query: 61 tccatggctctataatctgacaatatctaaagtaaaatgggatatttctctctggcatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tccatggctctataatctgacaatatctaaagtaaaatgggatatttctctctggcatac 330
Query: 121 ataaaaatcctgtaccataaatggcaggaaaagaatcctggggtcctcctcagactcctg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ataaaaaccctgtaccataaatggcaggaaaagaatcctggggtcctcctcagactcctg 270
Query: 181 caacaatggccagtggatggggttctggcagtaaactacgcacaattcagacagttatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caacaatggccagtggatggggttctggcagtaaactacgcacaattcagacagttatct 210
Query: 241 tggtctcccttctttgagacagactcatgtagctgaagatgctgtgcccaccaactcctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tggtctcccttctttgagacagactcatgtagctgaagatgctgtgcccaccaactcctg 150
Query: 301 gtccttcctgcctctgtggctcgagtcctgggattacagatgtggcaacgtgtggctttc 360
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 149 gtccttcctgcctctgtggctcgagtcctgggattacagatgtggtaacctgtggctttc 90
Query: 361 actctgattttctgagtaaagattttttaagatttcaggctttaaaaagtaaatgtatca 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 89 actctgattttctgagtaaagattttttaagatttcaggttttaaaaagtaaatgtatca 30
Query: 421 gccagctatactaatctgctttctcattt 449
|||||||||||||||||||||||||||||
Sbjct: 29 gccagctatactaatctgctttctcattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
