BAC Information

Click to search

BAC

Clone NameMSMg01-152P16
Chromosome10 (Build37)
Map Location 78,222,880 - 78,429,643
singlet/doubletdoublet
Overlap geneSlc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574
Upstream geneLOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105
Downstream geneOlfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152P16.T7 (MSMg01no152_p16.b1)MSMg01-152P16.TJ (MSMg01no152_p16.g1)
ACCAG354706AG354707
length738731
length of high quality
(start - end)		646 (47 - 692)608 (73 - 680)
definitionCHROMAT_FILE: MSMg01no152_p16.b1 PHD_FILE: MSMg01no152_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:14 2005CHROMAT_FILE: MSMg01no152_p16.g1 PHD_FILE: MSMg01no152_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,429,001 - 78,429,643)(78,222,880 - 78,223,493)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAACACAATATCCTAATGAAGATTTCTTGAGCCATAAATGCTGAT
TGACCAGATTTTATTATTACAAACTTTCACACTGTATCCCACACAGTCAT
GCTGTAGAGTCACAGCAGCTAGACATCATACTAAAGATCACCATGAGTAC
AGAGATAAATTTTAAAACAACACTAATTACCTCCCTTTTATTTTCCTGTT
TTTGTGCTCCTAAATTCAATACACAAGAGATTCACTCCACATGTATCTGT
GTAACTTGTGAAGTGGAAGAAGTAGTATAATGGACGACCATAAACTATAA
AAATCATCATATGCATGATAGCAAATGTCAAAAAAAATTAAAATTAACAT
GATAATACCTTAAACAGAAAATTTAAAAATTTAAAATCCATACATAAAAA
GGAAAACTATATTAATAGTATTTCATGTATCTGAATGCTGGTGGTGCCTA
TAGGACATGTTCTTACTTTCCATCAAAAATATGTTATATTATATCCATAA
TTATATCTCACATATTTCATACAGCTGCAATAATTAACTGTATTCACTTT
TTTGTGCTAAGCCATAGCATATACCTTCTTTGTGTATTGCAGTGTCTTTT
GTGGTTTTCTTTATCTCCTCACACAAAAATATCTCCAGAGGCCTGGATAT
AAAATATTATAAAGCAGGTAATTTATTTCAAGGTATGC

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTTCTCTGTCATCTTAGCCAAGGTTG
CCTGTTCTCTATGAGAGTCAGGTACGTAGCAAAATGGTGACCTTGGGTAA
GGTTTAGGGAAGTTGCTGGGTGGATGAATGGATGAGAACCTTTGAAAAGT
TCTAGCTCCCCTTTCCTCCTTTTCTTTCGTTATCACATGGAAATGCCCTT
TGCTCTGAAATCTTGGCAGGTAATTATCAGAGACCCTTTTTTAGGTTCCC
CGATGTCTTCCCTTCTGGGGCACTGGTTTCTACTTTTAGCAGGTGCCCCC
TTTCTCTTGGAGATAATCACATCAATTGGTCTCTCATTCCAGGGGGATGT
GACCTAGAATCTGTTTTGTCTTTGAGAAATGAGGTCAAATTCCTGGCAGA
GGTGTCAGGAGATGTGGGAAGCCCCAGGCTGTGTGGAAAGCTTTCTGACA
CCAAAGGTGGTGACCATATAGGTCAGCGAGTTATAAGGATTTGTCTTTGG
GGCTGTAACTTTATTGGTCCTTTGAGTTGACTCAGGCCAAAATCATTTAG
GGGCTCTTACTATTACTTCTTCTCCAGTTTTTTCCCAACTGGATTCACAG
GAAGCATTTTAAATTGTTGAACACTGTGGCGTGGTGAGTAGTGTACAAAC
ACCCTGGTCCCTTGGCGATCATAGGCCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_p16.b1 MSMg01no152_p16.b1 CHROMAT_FILE:
MSMg01no152_p16.b1 PHD_FILE: MSMg01no152_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:14 2005
         (646 letters)



>mm_chr10_78428799_78429843
          Length = 1045

 Score = 1106 bits (572), Expect = 0.0
 Identities = 626/644 (97%), Gaps = 1/644 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattctaacacaatatcctaatgaagatttcttgagccataaatgctgattgaccaga 62
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ggaattctaacacaatatgataatgaagatttcttgagccataaatgctgattgaccaga 786

                                                                       
Query: 63  ttttattattacaaactttcacactgtatcccacacagtcatgctgtagagtcacagcag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttttattattacaaactttcacactgtatcccacacagtcatgctgtagagtcacagcag 726

                                                                       
Query: 123 ctagacatcatactaaagatcaccatgagtacagagataaattttaaaacaacactaatt 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 725 ctagacatcatactaaagatcaccatgagtacagagataaattttaaaacaacagtaatt 666

                                                                       
Query: 183 acctcccttttattttcctgtttttgtgctcctaaattcaatacacaagagattcactcc 242
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 665 gcctcccttttattttcctgtttttgtgctcccaaattcaatacacaagagattcactcc 606

                                                                       
Query: 243 acatgtatctgtgtaacttgtgaagtggaagaagtagtataatggacgaccataaactat 302
           ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 605 acatgtaactgtgtaacttgtgaagtggaagaagtagtagaatggatgaccataaactat 546

                                                                       
Query: 303 aaaaatcatcatatgcatgatagcaaatgtcaaaaaaaattaaaattaacatgataatac 362
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 545 aaaaatcatcatatgcatgatagcaaatgtcaaaaaaa-ttaaaattaacatgttaatac 487

                                                                       
Query: 363 cttaaacagaaaatttaaaaatttaaaatccatacataaaaaggaaaactatattaatag 422
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 486 cttaaacagaaaagttaaaaatttaaaatccatacataaaaagaaaaactatattaatag 427

                                                                       
Query: 423 tatttcatgtatctgaatgctggtggtgcctataggacatgttcttactttccatcaaaa 482
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 426 tatttcatgtatctgaatgctggtggtgcctataggacatgttattaccttccatcaaaa 367

                                                                       
Query: 483 atatgttatattatatccataattatatctcacatatttcatacagctgcaataattaac 542
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 366 atatgttatattatatccataattatgtctcacatctttcatacagctgcaataattaac 307

                                                                       
Query: 543 tgtattcacttttttgtgctaagccatagcatataccttctttgtgtattgcagtgtctt 602
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 306 tgtattcacttttttgtgctaagccatagcaaataccttctttgtgtattgcagtgtctt 247

                                                       
Query: 603 ttgtggttttctttatctcctcacacaaaaatatctccagaggc 646
           |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttgttgttttctttatctcctcacacaaaaatatctccagaggc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1045
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1035
Effective search space:   658260
Effective search space used:   658260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no152_p16.g1 MSMg01no152_p16.g1 CHROMAT_FILE:
MSMg01no152_p16.g1 PHD_FILE: MSMg01no152_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:14 2005
         (608 letters)



>mm_chr10_78222680_78223694
          Length = 1015

 Score = 1145 bits (592), Expect = 0.0
 Identities = 606/614 (98%), Gaps = 7/614 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttctctgtcatcttagccaaggttgcctgttctctatgagagtcaggtacgtagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttctctgtcatcttagccaaggttgcctgttctctatgagagtcaggtacgtagcaa 260

                                                                       
Query: 61  aatggtgaccttgggtaaggtttagggaagttgctgggtggatgaatggatgagaacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggtgaccttgggtaaggtttagggaagttgctgggtggatgaatggatgagaacctt 320

                                                                       
Query: 121 tgaaaagttctagctcccctttcctccttttctttcgttatcacatggaaatgccctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaagttctagctcccctttcctccttttctttcgttatcacatggaaatgccctttg 380

                                                                       
Query: 181 ctctgaaatcttggcaggtaattatcagagacccttttttaggttccccgatgtcttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgaaatcttggcaggtaattatcagagacccttttttaggttccccgatgtcttccc 440

                                                                       
Query: 241 ttctggggcactggtttctacttttagcaggtgccccctttctcttggagataatcacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctggggcactggtttctacttttagcaggtgccccctttctcttggagataatcacat 500

                                                                       
Query: 301 caattggtctctcattccagggggatgtgacctagaatctgttttgtctttgagaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caattggtctctcattccagggggatgtgacctagaatctgttttgtctttgagaaatga 560

                                                                       
Query: 361 ggtcaaattcctggcagaggtgtcaggagatgtgggaagccccaggctgtgtggaaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtcaaattcctggcagaggtgtcaggagatgtgggaagccccaggctgtgtggaaagct 620

                                                                       
Query: 421 ttctgac-accaa------aggtggtgaccatataggtcagcgagttataaggatttgtc 473
           ||||||| |||||      |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgaccaccaacttcaaaggtggtgaccatataggtcagcgagttataaggatttgtc 680

                                                                       
Query: 474 tttggggctgtaactttattggtcctttgagttgactcaggccaaaatcatttaggggct 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttggggctgtaactttattggtcctttgagttgactcaggccaaaatcatttaggggct 740

                                                                       
Query: 534 cttactattacttcttctccagttttttcccaactggattcacaggaagcattttaaatt 593
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 cttactattacttcttctccagtttttccccaactggattcacaggaagcattttaaatt 800

                         
Query: 594 gttgaacactgtgg 607
           ||||||||||||||
Sbjct: 801 gttgaacactgtgg 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1015
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1005
Effective search space:   600990
Effective search space used:   600990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |