BAC Information

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BAC

Clone NameMSMg01-154P04
Chromosome10 (Build37)
Map Location 4,616,116 - 4,616,651
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC237252, LOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395
Downstream geneVip, Myct1, Syne1, Esr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154P04.T7 (MSMg01no154_p04.b1)MSMg01-154P04.TJ (MSMg01no154_p04.g1)
ACCAG356100AG356101
length707708
length of high quality
(start - end)
599 (72 - 670)517 (145 - 661)
definitionCHROMAT_FILE: MSMg01no154_p04.b1 PHD_FILE: MSMg01no154_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:43 2005CHROMAT_FILE: MSMg01no154_p04.g1 PHD_FILE: MSMg01no154_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTACCTCTGTGCCCATTTTTTAATGGGGTTATTTGATTTTCT
GGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCCCGAT
CTGATTTAGGATTGGATTGTTAAAAATCCTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGACAGTGTCTTTTGCCTTCCAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTGTTGATTCTCAATCTTACAACACAAGCCATTACTGT
CCTGTCCAGGAATTTTTTCGCTGTGAGCATATCTTCTAGGCTTTCCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTG
ATCTACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCG
CATTCTTCTACATGATTATCTCCAGTTGTGCCAGCACCATTTGTTGAAAA
TGCTGTCTTCTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAA
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
ATCTACCTGTCTGTCGCTGTACCAGTACCATGCAGCTTTTATCACTATTG
CTCTGTACTACAGCTTGTGGTCAGGCTTGGTGATTCCCCCAGAGGTTCTT
CTATTGT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAA
GCTTGAGGGCCAGCTCATCTTAGGTATACAGCAGGGACCAGTAAAAGAAA
GACCTTGTCTCAAACTAGATGGAATGCAAAGACCACCTTCAAGGTTATCC
TTTGACCAACACAAAAGTACCGTGATACCAAGCTATGCCTGTGAACACAT
GCATACACACACACACACACACACACACACACACAGCCATGTCACCATGC
TATGCCTGCATGCATGCCCACCATGCAAATCACACCATTACACCCACCCA
CAACCCCCACATGGGGATGGTGGAGAGAGGGGGAGTTAATATTGTTCTGG
AAACAAGCAGTTTGTGTGTTTATGATGGATTTCTGTGAATGTTAAGATGC
TGATAGTTGCCTTGTTTGATCCATAGCAGGAAGCTGTGCTATGGTAAAGC
AAAGACAAGACATAAATTTGATGGCTTTTTGGGCTTTCTGGACTCAAGCC
AGTTGTCTAGGTGTTCTCCTGCTGAAGAGACACCATGACCATAGCAACTC
CTAAAGGAAAGCATTAATTGGGAGTTGCATAGGGTTTCAGAGGTTTAGCC
CATTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_p04.g1 MSMg01no154_p04.g1 CHROMAT_FILE:
MSMg01no154_p04.g1 PHD_FILE: MSMg01no154_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:43 2005
         (517 letters)



>mm_chr10_4615935_4616851
          Length = 917

 Score =  942 bits (487), Expect = 0.0
 Identities = 515/537 (95%), Gaps = 21/537 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaagcttgagggccagctcatcttaggtatacagcagggaccagtaaaagaaagacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctagaagcttgagggccagctcatcttaggtatacagcagggaccagtaaaagaaagacc 241

                                                                       
Query: 61  ttgtctcaaactagatggaatgcaaagaccaccttcaaggttatcctttgaccaacacaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttgtctcaaact-gatggaatgcaaagaccaccttcaaggttatcctttgaccaacacaa 300

                                                                       
Query: 121 aagtaccgtgataccaagctatgcctgtgaacacatgcatacacacacacacacacacac 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagtactgtgataccaagctatgcctgtgaacacatgcatacacacacacacacacacac 360

                                                                       
Query: 181 acacacacaca--------------------gccatgtcaccatgctatgcctgcatgca 220
           |||||||||||                    |||||||||||||||||||||||||||||
Sbjct: 361 acacacacacacacacacacacacacacacagccatgtcaccatgctatgcctgcatgca 420

                                                                       
Query: 221 tgcccaccatgcaaatcacaccattacacccacccacaacccccacatggggatggtgga 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgcccaccatgcaaatcacaccattacacccacccacaacccccacatggggatggtgga 480

                                                                       
Query: 281 gagagggggagttaatattgttctggaaacaagcagtttgtgtgtttatgatggatttct 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gagagggggagttaatattgttctggaaacaagcagtttgtgtgtttatgatggatttct 540

                                                                       
Query: 341 gtgaatgttaagatgctgatagttgccttgtttgatccatagcaggaagctgtgctatgg 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtgaatgttaagatgctgatagttgccttgtttgatccatagcaggaagctgtgctatgg 600

                                                                       
Query: 401 taaagcaaagacaagacataaatttgatggctttttgggctttctggactcaagccagtt 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taaagcaaagacaagacataaatttgatggctttttgggctttctggactcaagccagtt 660

                                                                    
Query: 461 gtctaggtgttctcctgctgaagagacaccatgaccatagcaactcctaaaggaaag 517
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtctaggtgttctcctgctgaagagacaccatgaccatagcaactcctaaaggaaag 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)