BAC Information

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BAC

Clone NameMSMg01-155A20
Chromosome10 (Build37)
Map Location 8,247,486 - 8,247,720
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust
Downstream geneSash1, LOC100039173, EG666625, LOC666636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155A20.T7 (MSMg01no155_a20.b1)MSMg01-155A20.TJ (MSMg01no155_a20.g1)
ACCAG356176AG356177
length732734
length of high quality
(start - end)
371 (41 - 411)629 (74 - 702)
definitionCHROMAT_FILE: MSMg01no155_a20.b1 PHD_FILE: MSMg01no155_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:52 2005CHROMAT_FILE: MSMg01no155_a20.g1 PHD_FILE: MSMg01no155_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCCGCGGAAT
TCTTTGTTTTGCCATGTACCCCATTTTTAATAGGGTTATTTGATTTTTCT
GAAGTCCATCTTCTTGAGCTCTTTATATATATATATATATATATTGGGTA
TTAGTTCCCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTT
GCTGGCCTTTCTGTCTTGTTGACAGTGTCTTTTGCCTTACAGAAATGGTG
CTGGCACAACTGGCAGTTATCATGTAGAAGAATGCAAATTGATCCATTCT
TATCTCCTTGTACAAAGCTCATGTCTAAGTGGATCAAGGAACTCCACATA
AAACCAGAGACACTGAAACTTATAGAAGAGAAAGTGGGGGAAAGCCTCGA
AGATATGGGCACACCCCCACAAATTCCTGAACAGAACAGCAATGGCTTAT
GCTGTAAGATCTAGAATTGACAAATGGGACCTCATAAAATTGCAAAGTTT
CTGTAAGGAAAAAGATACTGTGGCTCCCTTCTTAAGAGGTGCCTAAATCT
ACCTCTTCACTTTTAAAAGGTTCCTCTTGTGCTTTTACCTTAAACTCCCT
GCCCACTGTCGCATACTTGGAGGCCTACAGCACTTCTCAGCCTTCCGAAA
GCTGTGACCCTTCAGTTTACTTTCCCACGTCGTGGTGACCCCTATTTTAC
ATATCTTCCTCCCACTTCCTATTTACACTCCG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATCTAAGACAGGGTCTCAAGCAGCCT
ACTGTGCCGGTTTGAGTGAGGTTGTCCCATAGGCTCATATATGTGAATAT
TTTGTCCCCAGTTGCTGAAACTGTTTGGGAAAGAGAAGAAGGTATGGCCT
TGTTGGAGGAGGTGGGTCACTCCATGGGCTTTAAAGTTTCAAAAGTTCAA
GTCAGCTTGAAACTTTAAAGTTTCAAAAGTTCCCAGTTAGCTTTCTCCGC
CCCATGCTTGTGGATCAATGTAAGCTTTCAGCTACTACTCCAGCAACATG
CCTGCCTGCCTGCCTGCCTGCCAGCTGCTGTGTGCCTCACCATAATGTTC
TGAAACTGTAAGCCCCACCCACCCCATTTTCTTCCATAAACTGCCTTGGT
CATTGAGTTTTATTACAAAATAGAAAAGTCACCAAGACACCCAGGCGGGC
TCCAACTCCTTTCTTGGTTACCGAGGTTGGACTTGGGCTCCTGATTCTCT
TGTCCCTGTCTTCACAAAGTATAGACAAACACCACATCTACCACCCCAAT
TAATAAGTGTCCCATAGCTAAATACTATTTCCACTCACCAAATTATTCCT
TTTGTAAACAAACTGAACACTGGGTGTCTCTAACGATACGAATGGCTTAA
GAAGTTACAGCGTGCACCACAAACAAGGTGCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_a20.g1 MSMg01no155_a20.g1 CHROMAT_FILE:
MSMg01no155_a20.g1 PHD_FILE: MSMg01no155_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:52 2005
         (629 letters)



>mm_chr10_8246796_8247824
          Length = 1029

 Score =  426 bits (220), Expect = e-123
 Identities = 232/236 (98%), Gaps = 1/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 394 aaaatagaaaagtcaccaagacacccaggcgggctccaactcctttcttggttaccgagg 453
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aaaa-agaaaagtcaccaagacacccaggcgggctccaactcctttcttggttaccgagg 867

                                                                       
Query: 454 ttggacttgggctcctgattctcttgtccctgtcttcacaaagtatagacaaacaccaca 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ttggacttgggctcctgattctcttgtccctgtcttcacaaagtatagacaaacaccaca 807

                                                                       
Query: 514 tctaccaccccaattaataagtgtcccatagctaaatactatttccactcaccaaattat 573
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 806 tctaccaccccaattaataagtgttccatagctaaatactatttccactcaccaaattat 747

                                                                   
Query: 574 tccttttgtaaacaaactgaacactgggtgtctctaacgatacgaatggcttaaga 629
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 746 tccttttgtaaacaaactgaacactgggtgtctctaacgatatgaatggctcaaga 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)