BAC Information

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BAC

Clone NameMSMg01-155D07
Chromosome10 (Build37)
Map Location 89,613,645 - 89,613,955
singlet/doubletsinglet
Overlap geneAnks1b
Upstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155D07.T7 (MSMg01no155_d07.b1)MSMg01-155D07.TJ (MSMg01no155_d07.g1)
ACCAG356285AG356286
length727731
length of high quality
(start - end)
311 (125 - 435)92 (136 - 227)
definitionCHROMAT_FILE: MSMg01no155_d07.b1 PHD_FILE: MSMg01no155_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:04 2005CHROMAT_FILE: MSMg01no155_d07.g1 PHD_FILE: MSMg01no155_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAATAGTCTCTCCATGAAATTTATGTTTTGTGGCTCCTTTTCTCTT
TGTCTAGTAATGCACAATTATCTTAATCTTTCTTAAGCTTAGACTATATA
AATAAAGATCTACTTTCTGTGGAATTTTCACCTTCTTCCTTCTGGACCTT
TAAAACTATAGGTGTTCAGTAAAAAGTTTAAAAGGCATTTGAAACAAAGA
AATACTTCCATGTGTGCATGAGGTTTCTTTTCCATATACATATATGCATA
TATATGATTATATTTATTTTGATAAAGGCTTTTCAAATACCTTTTATACA
ACTCTAATAGTCCTGTCCACTCAATGGGAGGAAATCTCAGCCTGACACTG
TAAACTTACTCAACTTCTTGAGGGTGGTAAGGCCCTGGAGGCTAGATGAA
ATACCTTCTACATTACTAAAGCAGAATAAACAATAACTGTATTCTAAATA
CCCATCCTTATGTTCACAGATCACTGTAGCTGTCACCCCTCATCAAAGAA
GCTTCATTCACAGCAGATGGGAATTGTTACTCAAAGCTACAACTGGCCGA
AGTGCATAGGTCAATTACAATGGGCTGCCCATCTCCCATTAGTACATTGC
ACACCCCCCCCACTTAATACTCCCGGAACATATAAGAAAAACGTGTGGAC
AATTGTAAGAACCACAGGATTAGGACA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGGGACAATTTGTCAAGCTGA
TTTCTATACTAAACCCAACTATCAAACACAATGAGGGGGGGTCATATATC
TATGCCGATTAACTTGTGTTCCATTTAGAAAAGGAAATGAAACAAGAACA
AAACTGTACAGGAATTTTAATCCAGCAACATAACTGCTCTGGCAAGTGAT
TACATCCAAAAAACTACATCTATGTGATCTGCCACACACCTTTAATCCCT
CACGTACCTTTGAGGTACAGTTAGTTTGTACAAGGAACCAACAATGCTTG
AAAGTGATGTCTAACTATTGCCTATGCCAGCAAGATTTTGGTGACAGGAC
CCTGATATAGCTGTCTTTTTGTGAGCCTATGCCAGTGCCTGGCTGATATA
CAAGTGGATGCTCACCGGCATTTATTGCATGGAACACAGGGCCCCCAATG
GAGGAGCTAGAGAAAGTACCCAAGACACTAAAGGGATCTGCCACCCTATA
GGACGAACAACCCTATGAACTAACCAATACCCCCAGAGCTTGCGTCTCTA
GCTGCATATGCCGCAGAACATGGCCTAGCCAGCCATCATTGGAAGGACAC
GCCCTTGGTCTTGCCAAGATTATATGCCCCATGACAGGACAAAGTTAGGC
CCCCCCAATTGGGAGGCCCCTGGGTATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_d07.b1 MSMg01no155_d07.b1 CHROMAT_FILE:
MSMg01no155_d07.b1 PHD_FILE: MSMg01no155_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:04 2005
         (311 letters)



>mm_chr10_89613445_89614155
          Length = 711

 Score =  557 bits (288), Expect = e-163
 Identities = 306/312 (98%), Gaps = 2/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctttcttaagcttagactatataaataaagatctactttctgtggaattttcacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctttcttaagcttagactatataaataaagatctactttctgtggaattttcacctt 260

                                                                       
Query: 61  cttccttctggacctttaaaactataggtgttcagtaaaaagtttaaaaggcatttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttccttctggacctttaaaactataggtgttcagtaaaaagtttaaaaggcatttgaaa 320

                                                                       
Query: 121 caaagaaatacttccatgtgtgcatgaggtttcttttccatatacatatatgcatatata 180
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagaaatacttccgtgtgtccatgaggtttcttttccatatacatatatgcatatata 380

                                                                       
Query: 181 tgattatatttattttgataaaggcttttcaaataccttttatacaactctaatagtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattatatttattttgataaaggcttttcaaataccttttatacaactctaatagtcct 440

                                                                       
Query: 241 gtccactcaatgggaggaaatctca-gcctgacactgtaaacttactcaacttcttgagg 299
           |||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct: 441 gtccactcaatgggaggaaatc-caagcctgacactgtaaacttagtcaacttcttgagg 499

                       
Query: 300 gtggtaaggccc 311
           || |||||||||
Sbjct: 500 gtagtaaggccc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)