BAC Information

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BAC

Clone NameMSMg01-155G14
Chromosome10 (Build37)
Map Location 35,226,893 - 35,227,439
singlet/doubletsinglet
Overlap genenone
Upstream geneFrk, LOC667824
Downstream geneLOC100041585, LOC667860, Hs3st5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155G14.T7 (MSMg01no155_g14.b1)MSMg01-155G14.TJ (MSMg01no155_g14.g1)
ACCAG356428AG356429
length724722
length of high quality
(start - end)
553 (45 - 597)333 (76 - 408)
definitionCHROMAT_FILE: MSMg01no155_g14.b1 PHD_FILE: MSMg01no155_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:19 2005CHROMAT_FILE: MSMg01no155_g14.g1 PHD_FILE: MSMg01no155_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCCAAATTTCCCTTTTAAAAATCTTTGCCTGTATTTTATTCATTAC
TATTATAAAACTGTTCAGTAATTTTGGAATTGACTAAAGTATTCAAAAAT
ACATTATTGGCAATAATAAAACATGATTCTTCTACTGAAAGTCTTAATAA
CACTCCATTATCTAGTGAAGTAGAACAATATGTATGTGGTTTCTGTAATA
TATATTTTAAGTATCATTTTATACATCCAATGAAAAACTATTTAATATCA
TTAGTACTAACCACTCAAACAGTGCCAATGGTGCTATATTCCTGCTAAAT
AGTGCTTATTTTGCCTTTAACTTTTCAATTGAATATGTGAAATTTTCCTA
TGCATTCACTTAGCCTTTACAAAAACCCTTAATGGGTAAGTGATTTCACA
TTCCAAAAACAAATTGAATAATTTTTATGAGATAATACTGCCACTTCAGT
GGCAAAGTAACTTTTGAGGCTAGGAAAGCAGCAGATATTTATTAGGTGAC
ATATTTATAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGA
ATAATCAGGATGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTC
ACAAATAATATAAAACATCTTGGTGTGACTCTAACTAAGGAAGTGAAAGG
TCTGTATGATAATATTTTCCACTT
NCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCTAGAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATAGATTACAATGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTGAGGATTTTTGCATCAATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTAACTTTGTTGGATCTTTCTGTGGCTTAGGTATCAGAGTAATAGT
GGCTTCCTAAAACCACCCGGGTAGAGCACCTTCTACTTCTATCTTGTGAA
AAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTACCCCTGTCCGGTCCTGGGCTTTTTTTGGCTGTGACACCACC
CATAATTGCTTCCATCCCTTCACTCTATATGTTACCGTTTACAAGTTTTT
TTTGATCCTGATTCCTTTTTTCCCCTGCCTTTTGCCCATATTTTCGCTCC
TTTCTCCCCCCTCCTTTATCCTTGCCCGACCACACTCCCCTTTATCCCCA
TCCTTATCCTTTTCTACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_g14.b1 MSMg01no155_g14.b1 CHROMAT_FILE:
MSMg01no155_g14.b1 PHD_FILE: MSMg01no155_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:19 2005
         (553 letters)



>mm_chr10_35226726_35227678
          Length = 953

 Score = 1019 bits (527), Expect = 0.0
 Identities = 542/547 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccaaatttcccttttaaaaatctttgcctgtattttattcattactattataaaa 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gaattccaaatttcctttttaaaaatctttgcctgtattttattcattactattataaaa 655

                                                                       
Query: 67  ctgttcagtaattttggaattgactaaagtattcaaaaatacattattggcaataataaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctgttcagtaattttggaattgactaaagtattcaaaaatacattattggcaataataaa 595

                                                                       
Query: 127 acatgattcttctactgaaagtcttaataacactccattatctagtgaagtagaacaata 186
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 594 acatgattcttctactgaaagtcttaataacactccattatctagggaagtagaacaata 535

                                                                       
Query: 187 tgtatgtggtttctgtaatatatattttaagtatcattttatacatccaatgaaaaacta 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgtatgtggtttctgtaatatatattttaagtatcattttatacatccaatgaaaaacta 475

                                                                       
Query: 247 tttaatatcattagtactaaccactcaaacagtgccaatggtgctatattcctgctaaat 306
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 474 tttaatatcattagtactaaccactcaaacagtgccaatggggctatattcctgctaaat 415

                                                                       
Query: 307 agtgcttattttgcctttaacttttcaattgaatatgtgaaattttcctatgcattcact 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agtgcttattttgcctttaacttttcaattgaatatgtgaaattttcctatgcattcact 355

                                                                       
Query: 367 tagcctttacaaaaacccttaatgggtaagtgatttcacattccaaaaacaaattgaata 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tagcctttacaaaaacccttaatgggtaagtgatttcacattccaaaaacaaattgaata 295

                                                                       
Query: 427 atttttatgagataatactgccacttcagtggcaaagtaacttttgaggctaggaaagca 486
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 294 atttttatgagataatactgccacttcagtggaaaagtaacttttgaggctaggaaagca 235

                                                                       
Query: 487 gcagatatttattaggtgacatatttataaattaactcaaacaagtcaatggcctttctc 546
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gtagatatttattaggtgacatatttataaattaactcaaacaagtcaatggcctttctc 175

                  
Query: 547 tacacaa 553
           |||||||
Sbjct: 174 tacacaa 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)