BAC Information

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BAC

Clone NameMSMg01-155K06
Chromosome10 (Build37)
Map Location 57,678,459 - 57,678,906
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
Downstream geneEG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155K06.T7 (MSMg01no155_k06.b1)MSMg01-155K06.TJ (MSMg01no155_k06.g1)
ACCAG356595AG356596
length721721
length of high quality
(start - end)
221 (380 - 600)551 (76 - 626)
definitionCHROMAT_FILE: MSMg01no155_k06.b1 PHD_FILE: MSMg01no155_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:35 2005CHROMAT_FILE: MSMg01no155_k06.g1 PHD_FILE: MSMg01no155_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCGAGGATCCGCGG
AATTCTCAACTGATTACTAAAAAAGGGCTGAGAAGCACCTGAAAAATGTT
CAACATCTTTAATCATCAGGGAAATGCAATTCAAAACCACCCTGAGATTC
CACCTCACACCAGCCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATTCTGGAGAGGATGGGGAGAAAGAGGAAAACTCCTCCATTGCTGATGGG
ATTGCAAGCTTGTAAAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGTATTATCAGTAATACTTCTCCAGGGCAT
ATATCCAGCAGATATTCCAACCGGCAACAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAACCTGGAAAGAACCCAGATCT
CCCTCAACAGAGGAATGAATACAGAAAATGTGGCACATTTACACAATGGA
GTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTGGGCAAAT
GGATGTATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAGAAG
AAGTCTCTTGATATGCACTCACTGATAAGTGGATATTACCCCAGAAACTT
ATACCCAAGATGCAATTTGTTTTACACAAGATAATCCCGAAGAAGAAGAC
CAACTTGTGTATGCTTCATTN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTTGGTTGGATTAGCCATAT
ATTTATGTTCACACCAATGAGAAAATTACAAAATAGAAGAGCTGGTAATG
AGAAATGGTGACATTTTTTGACTACCTGTATTATAGGTGATTGGTTTGGA
CCAATGAATGGAGAAGAACACAATGATATGGACAGAAGTCTCCTATGGCA
GGGCTGCACTACTTTATAATGATGACAGTAGAATCCTGTATAATTCAAGG
TGGGAAATTTAGATATTATTGGATCATTTCTGTTATATTCCAAGGGAAAC
AAAGTCTGACTGCTTTCTTTTCATGTCCTGATATATGAACTGGGGCTGAA
TTCAATATTCAAACATGGCCAATTTTAAGTCTATGTGCTTTGTAGGCAAC
CAAGAACTACTAAAACATTTAGGAGGAGGAAAAGATAGGCAATGCATAAT
ATGAACTATTTGCTATCATTCTTCAAAATGTCTCCCTGTGATGTTATCAC
ACGCAACCAATGAATCATTGCTTGACAGAGTTATTTTTCCTCAATTTCTG
TACTACAACCAGTGCCCTGGTGATTTTTCTAATAGCTGTGACCAAATCTC
ATAGTACAACCCCCTCATGGTAAGAAGAGTTTATTTGTGCACTGGCTTTC
TAGACACACATAATTCCCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_k06.g1 MSMg01no155_k06.g1 CHROMAT_FILE:
MSMg01no155_k06.g1 PHD_FILE: MSMg01no155_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:35 2005
         (551 letters)



>mm_chr10_57678459_57679411
          Length = 953

 Score =  812 bits (420), Expect = 0.0
 Identities = 441/448 (98%), Gaps = 2/448 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctttgg-ttggattagccatatatttatgttcacaccaatgagaaaattacaaaat 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 448 tttcctttggtttggattagccatatatttatgttcacaccaatgagaaaattacaatat 389

                                                                       
Query: 60  agaagagctggtaatgagaaatggtgacatt-ttttgactacctgtattataggtgattg 118
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 388 agaagagctggtaatgagaaatggtgacattcttttgactacctgtattataggtgattg 329

                                                                       
Query: 119 gtttggaccaatgaatggagaagaacacaatgatatggacagaagtctcctatggcaggg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtttggaccaatgaatggagaagaacacaatgatatggacagaagtctcctatggcaggg 269

                                                                       
Query: 179 ctgcactactttataatgatgacagtagaatcctgtataattcaaggtgggaaatttaga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctgcactactttataatgatgacagtagaatcctgtataattcaaggtgggaaatttaga 209

                                                                       
Query: 239 tattattggatcatttctgttatattccaagggaaacaaagtctgactgctttcttttca 298
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 208 tattattggatcatttctgttatattccaagggaaacaaagtctgactactttcttttca 149

                                                                       
Query: 299 tgtcctgatatatgaactggggctgaattcaatattcaaacatggccaattttaagtcta 358
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 148 tgtcctgatatatgaactggggctgaattcaatattcagtcatggccaattttaagtcta 89

                                                                       
Query: 359 tgtgctttgtaggcaaccaagaactactaaaacatttaggaggaggaaaagataggcaat 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 88  tgtgctttgtaggcaaccaagaactactaaaacatttaggaggaggaaaagacaggcaat 29

                                       
Query: 419 gcataatatgaactatttgctatcattc 446
           ||||||||||||||||||||||||||||
Sbjct: 28  gcataatatgaactatttgctatcattc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 953
Length adjustment: 10
Effective length of query: 541
Effective length of database: 943
Effective search space:   510163
Effective search space used:   510163
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)