BAC Information

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BAC

Clone NameMSMg01-156M04
Chromosome10 (Build37)
Map Location 10,232,682 - 10,232,996
singlet/doubletsinglet
Overlap genenone
Upstream geneE130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238, LOC665110, 9130014G24Rik
Downstream geneRab32, EG382450, Grm1, Shprh, Fbxo30, Epm2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156M04.T7 (MSMg01no156_m04.b1)MSMg01-156M04.TJ (MSMg01no156_m04.g1)
ACCAG357417AG357418
length772778
length of high quality
(start - end)
319 (45 - 363)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no156_m04.b1 PHD_FILE: MSMg01no156_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:58 2005CHROMAT_FILE: MSMg01no156_m04.g1 PHD_FILE: MSMg01no156_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAGAAATGATGTTACAGTGGTCTATGCTGAACAAAAGGATCATCT
TGAATATTGCACTCAATAGCTGCTTTCTGTATTACGGTGACTAATGTCAC
TGAAGTCCTAGCCTACTATACAAGCTATACAAAAGAAATAACATTGTCTT
AAGGCAAACATACCATAACAATTTCTTATAGACTGAATAGCCTATACAAA
ATAGAAATTTATTCTCACAGCTCTGAAGGCTAGCAAGTCCACAACAGGTT
TTAGTAGATTCAAATCTCTTGGCAGGTTAACAGTTGTTTTCTCTGTGTGT
CCTTGTGAGCCTTTGTTATCCCCACCCCCCCTCTCAAGTGAAGTGACATG
ACAGTTGTAATCCTAAATATTTTGTCCCTTGACTAATGCACCTTCCAAAA
GCATAGCTCCCAAATCAATAACCTTGGAAGTTAAAAGCCAGATGATCGGA
GCACTATTGTAGAGTCCTCTGCTCAACAAAGAGTTGGTCTATTTTTTTCC
AGTCAGTTCAACATATAGTGGGATAAGAAACCCTAAACCAGATCCTATCT
TTGGAGAAAGAATAGTATTTATGACCTGAGGTACAAAACCTTTTAGGATA
GCTGCATCCATATGACATCAGGAAATTTGGTAAAGACCCACTCCTGTTTT
ATGATTCTTTATGTGTGATCCTCTTCCCCAGTTTCTATAAATGGATTTAA
TTATATTTCTTTTGTCGTTACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATCCCAATTCAGCAGAAAGCA
ATTATTAAAAATATAAACAAACAAATAAACAAAAACATCATCTCAATCCC
TTAAGTTGGAATGTACAGTTTTGGTTATTCTATAAATTATAGATATGTTG
TCATTTTAGGGGATAATTTATAAATAATTATGGTCTTGTACAGAAAAGAA
ACAAATTCGGAAGTTTAGAATCAGGGATTTCTATCTTTTCTTTCCTCTTC
TCTATCCTTCTTTCTTAGGCAAAGGTAATAGTGTTGAAATGAAAAAAATG
GGGAGATATAGTATTTTTANTTCCCCTGACAGACCCACTGTTGGGTTATT
AAATCTAATCTTAAACAAAAGCATTTTATAAAAAAAATAATATGTTGATA
GAGATCTTTATTTTTAGATGCAGAATTGAGGTTGTATTTTGTTATATTGA
TACTGAATTTTATATATTGATACAGGTTTAAAGTTTTCACTGGTTAAAAT
CTTAGTATATTGATCACCAATTCTACATTAATTATGTTACTTCTTATATT
AGTATTGGCTCCTATGAAACATATTTATAAATTTCAAAGTGGAATCATTA
GTTCTCTTTAACAATCTGTTTAACAACAATTAAGTTATGGAAAGTTTAAC
TCTTACTCCCACCCTCTCCGATTATATTAGTATTCTTTATTAGGATAATT
TACTTATATATGATTTGTTCAACTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_m04.b1 MSMg01no156_m04.b1 CHROMAT_FILE:
MSMg01no156_m04.b1 PHD_FILE: MSMg01no156_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:58 2005
         (319 letters)



>mm_chr10_10232631_10233349
          Length = 719

 Score =  574 bits (297), Expect = e-168
 Identities = 310/315 (98%), Gaps = 2/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagaaatgatgttacagtggtctatgctgaacaaaaggatcatcttgaatatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaattcacagaaatgatgttacagtggtctatgctgaacaaaaggatcatcttgaatatt 307

                                                                       
Query: 65  gcactcaatagctgctttctgtattacggtgactaatgtcactgaagtcctagcctacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcactcaatagctgctttctgtattacggtgactaatgtcactgaagtcctagcctacta 247

                                                                       
Query: 125 tacaagctatacaaaagaaataacattgtcttaaggcaaacataccataacaatttctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tacaagctatacaaaagaaataacattgtcttaaggcaaacataccataacaatttctta 187

                                                                       
Query: 185 tagactgaatagcctatacaaaatagaaatttattctcacagctctgaaggctagcaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tagactgaatagcctatacaaaatagaaatttattctcacagctctgaaggctagcaagt 127

                                                                       
Query: 245 ccaca--acaggttttagtagattcaaatctcttggcaggttaacagttgttttctctgt 302
           |||||  |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 126 ccacaatacaggttttagtagattcaaatgtcttggcaggttaacagctgttttctctgt 67

                          
Query: 303 gtgtccttgtgagcc 317
           ||||||| |||||||
Sbjct: 66  gtgtcctcgtgagcc 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)