BAC Information

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BAC

Clone NameMSMg01-156O09
Chromosome10 (Build37)
Map Location 3,201,193 - 3,201,500
singlet/doubletsinglet
Overlap geneCnksr3
Upstream genenone
Downstream geneOprm1, A130090K04Rik, LOC237252, LOC100041224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156O09.T7 (MSMg01no156_o09.b1)MSMg01-156O09.TJ (MSMg01no156_o09.g1)
ACCAG357521AG357522
length806844
length of high quality
(start - end)
311 (101 - 411)235 (184 - 418)
definitionCHROMAT_FILE: MSMg01no156_o09.b1 PHD_FILE: MSMg01no156_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:08 2005CHROMAT_FILE: MSMg01no156_o09.g1 PHD_FILE: MSMg01no156_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACCTAACAAATAAAACCAAAAATTTTTTTTTTTATTTATTTTAANNNNN
NNNTAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGGTGTATGAAAAAATACAAATCAGTCCTGAATTCATCA
GATGATGTTTTTAATTTAGGTAGAAATGTCAGGTTTAGGTCGTTTTCCCC
AACTATAAATATCAAGGGCAGCTAACTGGTTTTTAATCCTATATGATTTC
AGAATCACAATTTCCTTGTCTCCTTAAAATTTTAGTTTTCCTTTTACCAG
ATAAAAGTAGAAGATACAATAACAGCTATTCTACTGATGCTTGCTCTCAA
GAAAAGAGCAGTCTAGGGAGAAATTTTTTTTTTAAGAACTTTAGAAATAA
ATCTCCACACAATTTTGATANTTTACCCCCCACACCCCCTCCATGAGTAG
CGTTGTCACCATGAGCACCTGCACCCCGCAGAAGAAAAATCTACCTGGGC
TTTCGTATCTAGGAAGCAAAGTATCCATTTCCACTACTGGTTCATCCGCT
ATCGCCAGATAACTCGATACATACTTTGCTACTCTTGAAATTATTATATT
TAATGTTTCTTTTTATGTTTTAGTACAGCCAATTACCTTATGATTATGTC
TCTTTTTATATTTACATAGTAAAAAACACTGCTCAATTCTTTCCTTGAAA
TTATATCACCTAGTTCCAGGGACGCTGATATCCATAGTCTGAATATTAGT
CTCTCTTTATATACTTTACCTACCTTTACACCATTACCTTTATCATTTAA
TATCCA
NAAATTTTCTTTTTTCNAATTTTATATCATTTATTACNTTNTTTAATTTT
NNTTATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATATTACCTAT
TCAGTAACATTCAAATTCACTTCTATTACACACAGTGAAACTAATTAGGC
ATTACAAAGAACAGGCTAGAGAAGCTCAGGGCTAGTCTGCATAGTAATTA
CTTAGGACAATAGCTGAGTCACAGCCATACACAGGAATACACAATGGCCT
AGGAAATATGTGGACTATCCATGAAAGAGTTAGTGGAAGGGAACTCCCCT
GGTACAGGTTTCTTCACTAGGCCCAGAGGAATAGCATAATCAGGTATTTA
CTAAAGAACCCCTGGTGTTGTTTTTAACAACAGACTAGCATTGCATCAGA
GCATTTACCTGGCTCCACTATAACCGGCCCCCTGACATCTTTTGATGTAT
GGATTCCTTTTGTTTTGTGTCACTGTAACTTGGCAGATGTGTTCGCCTGT
TTTTTTTTTTTTTTCTGTATAAAAAAAGACTCGTGTTTGTTTTGATCTAC
ACTCCCTTTGTGCTTCCTTGTTTTGTCACCACCATTTCTTGGGCGACTTC
TATTGTCCCTTCTTGCCGGAATCCCCTGTACTCCCCACAGTATTGTAAGT
GCGTGGCTGTATAACTATAAGGTTTCCAATGGTATTGTCTTATCCATTGA
AAACAGAATTTGTATGATATTTACTTCCTCAATATCACCTCCGCTTTTTC
CTGTGTAATTATTTGTGTATAGTTGTTTCTCATCTCACTTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_o09.b1 MSMg01no156_o09.b1 CHROMAT_FILE:
MSMg01no156_o09.b1 PHD_FILE: MSMg01no156_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:08 2005
         (311 letters)



>mm_chr10_3200989_3201700
          Length = 712

 Score =  547 bits (283), Expect = e-160
 Identities = 301/313 (96%), Gaps = 11/313 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggtgtatgaaaaaatacaaatcagtcctgaattcatcagatgatgtttttaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 512 gaattccaggtgtatgaaaaaatacaaatcagtcctgaattcatcagatgatgtttttca 453

                                                                       
Query: 65  tttaggtagaaatgtcaggtttaggtcgttttccccaactataaatatcaagggcagcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tttaggtagaaatgtcaggtttaggtcgttttccccaactataaatatcaagggcagcta 393

                                                                       
Query: 125 actggtttttaatcctatatgatttcagaatcacaatttccttgtctccttaaaatttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 actggtttttaatcctatatgatttcagaatcacaatttccttgtctccttaaaatttta 333

                                                                       
Query: 185 gttttccttttaccagataaaagtagaagatacaataacagctattctactgatgcttgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gttttccttttaccagataaaagtagaagatacaataacagctattctactgatgcttgc 273

                                                                       
Query: 245 tctcaagaaaagagcagtctagggag------aaattttttttttaagaactttagaaat 298
           ||||||||||||||||||||||||||      |||     ||||||||||||||||||||
Sbjct: 272 tctcaagaaaagagcagtctagggagaaaaaaaaa-----tttttaagaactttagaaat 218

                        
Query: 299 aaatctccacaca 311
           |||||||||||||
Sbjct: 217 aaatctccacaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 712
Length adjustment: 9
Effective length of query: 302
Effective length of database: 703
Effective search space:   212306
Effective search space used:   212306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)