BAC Information

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BAC

Clone NameMSMg01-157J08
Chromosome10 (Build37)
Map Location 25,718,411 - 25,718,699
singlet/doubletsinglet
Overlap geneC030003D03Rik
Upstream geneEG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697
Downstream geneLOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157J08.T7 (MSMg01no157_j08.b1)MSMg01-157J08.TJ (MSMg01no157_j08.g1)
ACCAG358027AG358028
length718715
length of high quality
(start - end)
175 (141 - 315)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no157_j08.b1 PHD_FILE: MSMg01no157_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:57 2005CHROMAT_FILE: MSMg01no157_j08.g1 PHD_FILE: MSMg01no157_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGCGNGGA
ANNCCNACTGTATCCCCAAGAGGGCAGCTNCAAGGAANNNCGGGGACGNN
GGAACACGGANGAAGTCTTCCCTATGCCAGAAGGCAANCNTAAAAGGNAC
TTATAANAAAATAATACTAAAAGAGAGCATGTGGATCCATACACCAGACT
AACGTGGGGATAGAGTATGAGTATATGGGTTATGAGAAAGCCAAGTTTCC
AGTATGTGAGTTTCTCTGAAACTCTTTGCCTCGTGAGTGCTTCCAGGCTT
CTCTGCCTGTCAAGCTTATTTTTTTTTAGNGCGCANAGCAGGAAANCCCA
NAAAATCTTTTTTTTTCCCGGCCGNACCCCCGNATGNCTTTAATCNNAGN
ANTTGGGAGGNNGAGGCAAATGNNTATCTGNAATTGAGAGCGGGGTGGTC
TACAGAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCCGTCTC
AAAAAACAAACAAACAAACAAACAAACTAACACCCCCCAAAACAAAAAAA
CCCTCCAAAACAAACAAACAAAAAAACCCCACTAAACTGAAAGCTACAAC
ATATATGTAGAGGACCTGGTGCAGACCTATGTAGGGCCTATGTATGCTAC
TTTAGTCTCTGTTATTTCACATGAACTTTGCTCGATGCTTTAGAAGGCCT
TGTTCCCTTAGCATCCTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGATCTTGAAAACACAAACTCCTTTA
GCACTGAGGGACATAGTTCATGAGTATTTCAGAGAAACCGCACAGCCAAT
GCCTACATGGTCAGCATATTGAAAATCACACTGGGGATGCTGTGGTGACC
TGGGAGATTGTTTATGACCTCATCATTTCTGCTCTCTTTTTCTAGTATGG
AGTTAGTGGCAGCAACTCCATGAATTGGGAGAACATAGATTTTTTTTTTA
ATTTCTAATTTTCACAATGAATCTCAATCAGTTTTTTTTCTCATCTAAAT
TCTCTGTCTGTTAACTACCTCGCCCACTATTTGACTATCAAATTCATGTA
GGAACCACCAACTCCTAAGGCCATAGTTTCAGGAAGGAGAACTGTAGGGA
GGACACTAAGTCATCAGGATGGACTGACCACTCTAAACTGGAATTTGTGC
CCCTCTGTCTAAGCTCTTTTGCATTATTCCAGTAGAATCTAGGTAATGTG
TAGAGAGGATGAGTGGCGTACGTTGCTCGAGCTGAGACGTTCAAGGTAAA
GGGCTGTATCTGCTAAAGCCTCATAGCCTGGCAAAGGCATGTGGTGAAAA
GCAAGGCCAGTTCAATGCTTGTGGTGCTTTGAGTAGGAATAGCTCCCGTA
GGCTCGAATACTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_j08.g1 MSMg01no157_j08.g1 CHROMAT_FILE:
MSMg01no157_j08.g1 PHD_FILE: MSMg01no157_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:57 2005
         (290 letters)



>mm_chr10_25718211_25718900
          Length = 690

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgatcttgaaaacacaaactcctttagcactgagggacatagttcatgagtatttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctgatcttgaaaacacaaactcctttagcactgagggacatagttcatgagtatttcag 430

                                                                       
Query: 61  agaaaccgcacagccaatgcctacatggtcagcatattgaaaatcacactggggatgctg 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 429 agaaaccgcacagccaatgcctacatggccagcatattgaaaatcacactggggatgctg 370

                                                                       
Query: 121 tggtgacctgggagattgtttatgacctcatcatttctgctctctttttctagtatggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tggtgacctgggagattgtttatgacctcatcatttctgctctctttttctagtatggag 310

                                                                       
Query: 181 ttagtggcagcaactccatgaattgggagaacatagattttttttttaatttctaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttagtggcagcaactccatgaattgggagaacatagattttttttttaatttctaatttt 250

                                                            
Query: 241 cacaatgaatctcaatcagttttttttctcatctaaattctctgtctgt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cacaatgaatctcaatcagttttttttctcatctaaattctctgtctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)