BAC Information

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BAC

Clone NameMSMg01-157M03
Chromosome10 (Build37)
Map Location 116,505,396 - 116,505,697
singlet/doubletsinglet
Overlap genenone
Upstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2
Downstream geneFrs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157M03.T7 (MSMg01no157_m03.b1)MSMg01-157M03.TJ (MSMg01no157_m03.g1)
ACCAG358153AG358154
length713712
length of high quality
(start - end)
314 (39 - 352)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no157_m03.b1 PHD_FILE: MSMg01no157_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:10 2005CHROMAT_FILE: MSMg01no157_m03.g1 PHD_FILE: MSMg01no157_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
AGAAAAGAAGTTTTCTTTTTCTTCCCTCCTTCCTCCCCTCTCCTTCCCCA
TTTTTTCTTTAAATCGTTTCCTTTTGTTTGTTTTTTTTTGAGACATGGTT
TCTTTTCATAGCCTTGACTGTCCTGGAATTCACTATGTAGGCCAGGCTGG
TTTACAATACAAAGACATCCTCTTGCCTCTGTCTCCCAAGTGCTGGGATT
AAAGGCCTGTGGCATTCTGCCTGGCTCTTTTAATTAAGTAATTAATTAAT
TTTTAATTTAAAATACGTTTAAGGCAGGGTCTCACTGTGTAGTCCAAGCT
GTCCTTAAATTTCGGACCGTNNCTCTGTCTTAGTCTTCCAAGTGCTGATA
CTCTAGGTATATACTACCAAAAGAGGCTAAGGCAGATGTGAGTTATTTCT
GTGATGGAACACTGTCTAGTGTACTATAGCTCTTGTCTGTAGGAGCCATT
TACATATTTGAATTAAATATGTATAAGAAAATCCTATATGTTCAATCTGT
TTTCTGCTCTTCTTTTAATGAATTGTGTTAAGTATAAGCTTTGGGAGTTC
AAAACTATTCAGTTAAATGTGATCTGAGAGTTAATACTTTGACTTAAATT
GAAGCCTTTTATTAAAGCTTGAGTTAAATAGCGTTCAGCCTACTGACTGC
CGTTTTTTTCTGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTCAGTATCTGGAGCCTCTATAAAAGAAA
TGTATGATCACTATTATACTTTTTTATGAGGTGGGACATATTTAAGGAAA
CCTTGATAGCCTTTAGTGCACAAGAAATGCTTCTTCCATAACCTATGTGC
ACTTCTAGAATACATCTAGGCTTTAACTACATAACTGCATCCGATATTCA
CAAGAAAGTAAACCTGTTACATACACACACACACACACACACCTTTAAAA
ACAAACAAAAAAATACACTTTCCTTAATTCCCCTATGGAATTTGACTACT
GCCATTCTATATGTTACCACAACCTGCCTGTAATATGTAATCTCTGTCGT
AGGGCTTAGTCCTTTGGAAGGAAGGACACTGTCTTTTATTACTAGTGATG
GGCTAACTAGTAGATTCTTTGGAGAGTGGAGATGACTGTCTTGGTGACTA
GCACAAGGCCGACTTTAAGCTCATCTGTTAAATATGAGCATGTGACCAGT
TACTGTCCCCAAAAGATCTTCAAAGGAGAAGTACATAAGCAATCCAAAGC
AGCTTTCAGAGTCTGAGCACTAACACCCTAGTCTTCAAAGATGCTTTGCA
CCACACCATAACCAATTTGAACATTCTGTAATGTGTGGCCCATGTACACA
CCCAATCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_m03.g1 MSMg01no157_m03.g1 CHROMAT_FILE:
MSMg01no157_m03.g1 PHD_FILE: MSMg01no157_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:10 2005
         (287 letters)



>mm_chr10_116505195_116505881
          Length = 687

 Score =  478 bits (247), Expect = e-139
 Identities = 279/303 (92%), Gaps = 22/303 (7%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctttcagtatctggagcctctataaaagaaatgtatgatcactattatacttttttatga 61
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 202 ctttcagtatctggagcctctataaaagaaatgtataatcactattatacttttttatga 261

                                                                       
Query: 62  ggtgggacatatttaaggaaaccttgatagcctttagtgcacaagaaatgcttcttccat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggtgggacatatttaaggaaaccttgatagcctttagtgcacaagaaatgcttcttccat 321

                                                                       
Query: 122 aacctatgtgcacttctagaatacatctaggctttaactacataactgcatccgatattc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aacctatgtgcacttctagaatacatctaggctttaactacataactgcatccgatattc 381

                                                                       
Query: 182 acaagaaagtaaacctgttacatacacacacacacacacacac----------------- 224
           | |||||||||||||||||||||||||||||||||||||||||                 
Sbjct: 382 ataagaaagtaaacctgttacatacacacacacacacacacacacacacacaacacacac 441

                                                                       
Query: 225 ----ctttaaaaacaaacaaaaaaatacactttccttaattcccctatggaatttgacta 280
               |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 442 acacctttaaaaacaaacaaaaaa-tacactttccttaattcccctatggaatttgacta 500

              
Query: 281 ctg 283
           |||
Sbjct: 501 ctg 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)