BAC Information

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BAC

Clone NameMSMg01-158H06
Chromosome10 (Build37)
Map Location 58,124,304 - 58,124,608
singlet/doubletsinglet
Overlap geneEdar
Upstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981
Downstream geneLOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158H06.T7 (MSMg01no158_h06.b1)MSMg01-158H06.TJ (MSMg01no158_h06.g1)
ACCAG358662AG358663
length732753
length of high quality
(start - end)
316 (46 - 361)87 (76 - 162)
definitionCHROMAT_FILE: MSMg01no158_h06.b1 PHD_FILE: MSMg01no158_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:59 2005CHROMAT_FILE: MSMg01no158_h06.g1 PHD_FILE: MSMg01no158_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGCCAGGGCTATACAAAAAACCAAACCAAAGCAAAGCAA
ACTAAAACAAAGCCAAAAAACACAAACAAACAAACAAACGCTTTAGAAAA
CGGGAGGCTGTGATGGCTTCCCAGTGCCCTCAGGCAGGACAAGGCCTGTG
TTAGTTCTTCATTATCTCTTCTGCCTTTTTCTTCCTCAAGGAAGCCTCAG
TCATACTCCCCACACATATTTTGTCAGCTCTTTGATTCTGTCTTTCTCAG
TTGTTTGAGAATTACTCATCTCTCCTTGGTTATGTTTTTCCTGTGGAATT
TTATGTCCATGTTTGTATTCACCCCCCCCCCATCTCCCACAGTTCAGGGA
TCCCGCACTTTGGGCACCCCCTATCTGATAATGAAGCCAGACACCAGGGA
CCTAACTAGCCTGGGAATGTGTTTGTGAGGTAGAGTTGAGCTGGGCTTTC
TGTGGCTTCTGCTACAGGTAATGGAGAGGGCCCGATGCTAACGGACTAAC
TCTCAGGGTCAGGCCGGGATGGGTTTACAGCATCTCACTCATTGCTCAAC
ATTTTTGTCCGTACAGGGAGGAGGTAATCTCTGCATTGCTGCACCCTCCG
TGGCCCTCTAGGAACTTGCATCAATTATATATTTAATACCTCCGTTCAAA
ACTTTTTCCTGCCCTTGATCCTTCCAGCTCTC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCTGGGCTACACCATGA
AACCCTGACTCAAAACACCAAGAGAAGGGGGAGCAGGGGAAGAGAAAGGG
GAGGGGAGAGGGAGGCGTACAGAGAATGCAACTGTGGTAGATTCCATCTA
TCATTAAGGTTTTTCCACTCTCCTCTTTAATTTCTCCCACTGTTCTCAGC
GCCCCTTATTGCCTTGTGCTTCCACATTTCTTTACGTCACTCATCGCTTT
CTCCCCCTTTTTCCTGCCTTCCTTTTTTTTTCGCTTATTTATTTTTTTTA
TACAAGGCATTTGGAGTTCCTCTTTAACGATTCCCCAAAAAAGAAATATT
TTTATGTTTTGTGGGCCTGCCCCCCCAAAAAAAAAAAAATTTTCGGGAGT
TCCTGTGTAATAACGTTTTCTTCTTTTTTTTTGTTTCTTGTCCTTCTCTT
TTTATTATTGTTTCGTTACTTGTCTTTTCCTCCTTTTTTATATATTTTTT
CCCCTCCCTTCTTTTTTTTTTTCTTTCTATCTCCCCTTCTCCTTTTTTTT
TCTTTTCTGGTTTTTTTTTTTCCCCACTTCCTTTTCCTCCCCTTTTTTTC
TCGCTTCTCTTTCTTTTTATTTTTTTTCTCTCTTTCCCCCCCCCTTTTTT
ATTTTCTTTTCTTACCCTCTACTTTCATTTTTTTTCTTTCTCCCCTCTCT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_h06.b1 MSMg01no158_h06.b1 CHROMAT_FILE:
MSMg01no158_h06.b1 PHD_FILE: MSMg01no158_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:59 2005
         (316 letters)



>mm_chr10_58124093_58124808
          Length = 716

 Score =  470 bits (243), Expect = e-137
 Identities = 283/305 (92%), Gaps = 17/305 (5%)
 Strand = Plus / Plus

                                                                       
Query: 29  acaaaaaaccaaac---caaagcaaagcaaactaaaacaaagccaaa------aaac--a 77
           |||||||| |||||   |||| |||||||||||||||||||||||||      ||||  |
Sbjct: 212 acaaaaaaacaaacaaacaaaccaaagcaaactaaaacaaagccaaaaaccccaaacaaa 271

                                                                       
Query: 78  caaacaaacaaacaaacgctttagaaaacg------ggaggctgtgatggcttcccagtg 131
           ||||||||||||||||| |||| |||||||      ||||||||||||||||||||||||
Sbjct: 272 caaacaaacaaacaaacccttttgaaaacgaaatcaggaggctgtgatggcttcccagtg 331

                                                                       
Query: 132 ccctcaggcaggacaaggcctgtgttagttcttcattatctcttctgcctttttcttcct 191
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccctcaggcaggacaaggcctgagttagttcttcattatctcttctgcctttttcttcct 391

                                                                       
Query: 192 caaggaagcctcagtcatactccccacacatattttgtcagctctttgattctgtctttc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 caaggaagcctcagtcatactccccacacatattttgtcagctctttgattctgtctttc 451

                                                                       
Query: 252 tcagttgtttgagaattactcatctctccttggttatgtttttcctgtggaattttatgt 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcagttgtttgagaattactcatctctccttggttatgtttttcctgtggaattttatgt 511

                
Query: 312 ccatg 316
           |||||
Sbjct: 512 ccatg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)