BAC Information

Click to search

BAC

Clone NameMSMg01-158L14
Chromosome10 (Build37)
Map Location 4,139,063 - 4,139,342
singlet/doubletsinglet
Overlap genenone
Upstream geneCnksr3, Oprm1, A130090K04Rik, LOC237252, LOC100041224
Downstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158L14.T7 (MSMg01no158_l14.b1)MSMg01-158L14.TJ (MSMg01no158_l14.g1)
ACCAG358854AG358855
length739734
length of high quality
(start - end)
314 (45 - 358)281 (74 - 354)
definitionCHROMAT_FILE: MSMg01no158_l14.b1 PHD_FILE: MSMg01no158_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:18 2005CHROMAT_FILE: MSMg01no158_l14.g1 PHD_FILE: MSMg01no158_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAACTCTTCGGCTGGGGAACAGGAGTACCAGTGAGTACAGCTTTA
CAAGGTAAGTCTGGTCTTGAACTTTCTAAGGAAAGTCAAGACAGTCTATC
AGAAGTAAAGTGGAAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTCT
TTTTAGTGTTAGGAGCCCTTTTGTTCTTTTTCACGTTATCAAGTGATTAA
GATAGGGCTAAAAATTCTAGATGAAATTCAGGACAATCTATCAGAAGTAA
AGCGGGGAGAGAGAGTATGAGCAAAGAGGAAATATGGTGCACAGAATAAG
TATACATGTCTTTCCAACGCCCCTCGAACCCAAGGAAAAGTTTAGGTCAG
GTAAGAATACCTGCCCCACAGATTAGAAGGAAGGAAAAGAAAAAAGAAAA
GAAAAAAGATCAATTAGCGGAGGTCTCTAGGAGATACTCGTCACTAGATG
AGCTCAGGAAGCCAGCTCTTAGTAGCTCTGAAGCAGATGAAGAATTCTCC
TCTGAAGAAACAGACTGGGAGGAAGAAGCAGCTCATTACCAGCCAGATAA
AGTGCTAGTTAATCGGTCAAGAAAAAAGCCAAAAGCGGCTGGCGAAAGCC
AGCATGCTGTTCAGCCTCCGGGCAGTCGGCTTCAAGGTCCGCCCTATGCG
GAGCCCCCGCCCTGCGAAATGAGTCAGCCCTGCGCATAG
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTATACAGAGAAA
CCCTGTCTCGAAAAAACAAAAACAGAAACAAAAACAAAGACAAAAACAAA
AAAAAGAAAGAAAAAAAGAAAGCTCTTATGCAGTTGAATCCTACTAAATA
ATTCTAAATAATTTAGAAAGTAAAAATAAAACTTAATTTGTTTCTGATAA
TCTTTCTAAAAAGTTGGTTGCATTTGTCTTGTTGCTGTTTAAATCACTTC
CTAGAGTAATTTGAATATTGCCATTCTCACATCCTCTCCTCTCAGAATTC
AAGAACATGATGGAGAGGCCCACTTTCTGTCTTACTTGTTGACTTTCTGT
CAGATGTTTTGCACCCTTTACATGGAAATTTTTCATTTTTAGCTGTATTT
CTAGATGCTTTCTCTTTTATTGCTTTGTTGCCTTTCTCATGGGGTGAATT
CTTTATTGCTGATCATTACAGCTGAAGTACAACTTTGTAATTCAGATTTC
TACCTCACAGCCTTTCTGGATTCGCTTACTATATTAATAGACTTTGGGTT
GCTGTGCTCAAACTTCAAGTATAGCATGACCCAGTTCTTAAACCTTTGAT
TTCCTTCCTCATGTTCAGCACTGGATGTCTAGAAATATAGCAAAGATGAT
GGGTATTCCAATTAATGATTTTTGAAAATGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_l14.g1 MSMg01no158_l14.g1 CHROMAT_FILE:
MSMg01no158_l14.g1 PHD_FILE: MSMg01no158_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:18 2005
         (281 letters)



>mm_chr10_4138862_4139542
          Length = 681

 Score =  482 bits (249), Expect = e-140
 Identities = 273/281 (97%), Gaps = 1/281 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagagctatacagagaaaccctgtctcgaaaaaacaaaaacagaaacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 caggacagccagagctatacagagaaaccctgtctcgaaaaaacaaaaacagaaacaaaa 261

                                                                       
Query: 61  acaaagacaaaaacaaaaaaaagaaagaaaaaaagaaagctcttatgcagttgaatccta 120
           ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 262 acaaaaacaaaaac-aaaaaaagaaagaaaaaaagaaagctgttatgcagttgaatccta 320

                                                                       
Query: 121 ctaaataattctaaataatttagaaagtaaaaataaaacttaatttgtttctgataatct 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctaaataattctaaataatttagaaagtagaaataaaacttaatttgtttctgataatct 380

                                                                       
Query: 181 ttctaaaaagttggttgcatttgtcttgttgctgtttaaatcacttcctagagtaatttg 240
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ttctaagaagttggttgcatttgtcttgttgctgtttagatcacttcctagagtaatttg 440

                                                    
Query: 241 aatattgccattctcacatcctctcctctcagaattcaaga 281
           |||||||||||||||||||||||||||||||| || |||||
Sbjct: 441 aatattgccattctcacatcctctcctctcagcatccaaga 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)