BAC Information

Click to search

BAC

Clone NameMSMg01-159A08
Chromosome10 (Build37)
Map Location 13,090,154 - 13,090,442
singlet/doubletsinglet
Overlap genenone
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2
Downstream geneLOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159A08.T7 (MSMg01no159_a08.b1)MSMg01-159A08.TJ (MSMg01no159_a08.g1)
ACCAG359072AG359073
length772725
length of high quality
(start - end)
284 (47 - 330)293 (78 - 370)
definitionCHROMAT_FILE: MSMg01no159_a08.b1 PHD_FILE: MSMg01no159_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:39 2005CHROMAT_FILE: MSMg01no159_a08.g1 PHD_FILE: MSMg01no159_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTGGACACATCTATCTAGTCAAATTCATTACATACAGTCTGCA
TTATATATGAGGATTTATGATGGGAGGTATGGGGAAGACCAAAGACATCC
TGGATGGCTTCAACAACCGGAAGTTATATTTCCTCACAGTCCTAGAGGAT
AGAAGTCCAAGATGAGGGTGTTAGAGAGATTCGGTTTCTCCTGCACTCTT
CTCCTTGGCTTGCGGATAACTGTCTTCTTTGCATGGCTTTCCCCGGTGGA
TTTGCATCTTTACTGCCTCTCCCTTATATATACGCCTAGTCCTCTGGTAT
TAGGGCTAGCCCAATTTTTTTTTCCCCTTGCTTACCCCCAGAGATCTGTT
TTTTATATATGTCATTTGTCCCCCCAAAAAAAAAAAAAAAAGATAGGCGG
GGTTTGTTTCTCCGCACCCCACCTATTTTTTCGTCCCTGTGTTTGCCCTC
TGCGCCCGTACTCTATTTACATTAAAACCAGCTATTCAACCCCCCCCCGA
TTGCTACACCTCCATAGCCCTCTATTTAATCACTATATTCCATAACATTT
TCACGTTTTTTTCCTTTTACTTAGTGTTTTCCGTTCGTTTAAGCTATATT
TCTAGCCCACTTCTTTCCCCTACCTCTTTTTTTTTTCGTTATATATACTT
CCCTCAATAACTGAATTACGACAAAATATAACTACGCGATGTTCTCCTCA
TCCAAACGGCTGTATTTTTCTC
GCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACACCTCTGACTTTCCCTAA
GCGTACATACGTCTAATAAAGCGTCTCAATCTGGCACAATAAGAATGAGT
GACCATCTTTAATAAAACAGAACAATGAAAGCAGCACACTGCAATAGGAG
TTTGAACCTTGGGGCATTGTTAAGTAGCATGATGACCACTTGAAAGGAAG
CATGACACTTTTGTTTTATTTTGTTTCTTTAAAAAAAATTTATTCATTAT
GTATACAGTGTTCTTCCTACATATATGCCTGCACACCAGAAAAGAGCATC
CAATCCCATTACAGATGTTTGTTAGCCCCCCCGCGCCCGCTGGAAATTGA
ACTCAGGACCTCTGGAAGAGCACCGAGTGCTCTCAAAGAAGAGCCATTGC
TCCAGCCCTTGTTTGTTTGTTTTTGTTTTTGAGACTTGTCTTACTGCGCA
GATCTGGATGTTCCGGAACTTGCTAGTGCATCACCACAGTTGGCATGACA
TCACCACAGCTGGTATGACACATTGGCTATAACTCACCCAGCTAAGCGGA
TTAATGAGACAGTAGCATATACCATGTGAACCTGCTGGGCAAAGGAGTGA
CTTGCCTCCTGGGATGGGAAAAATAGAGGAAATTTGACGGTCCATCCCAA
TACTCAGGAAAAAATGCGACGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_a08.g1 MSMg01no159_a08.g1 CHROMAT_FILE:
MSMg01no159_a08.g1 PHD_FILE: MSMg01no159_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:39 2005
         (293 letters)



>mm_chr10_13089954_13090646
          Length = 693

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacacctctgactttccctaagcgtacatacgtctaataaagcgtctcaatctggcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacacctctgactttccctaagcgtacatacgtctaataaagcgtctcaatctggcac 260

                                                                       
Query: 61  aataagaatgagtgaccatctttaataaaacagaacaatgaaagcagcacactgcaatag 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataagaatgagtgaccatctctaataaaacagaacaatgaaagcagcacactgcaatag 320

                                                                       
Query: 121 gagtttgaaccttggggcattgttaagtagcatgatgaccacttgaaaggaagcatgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtttgaaccttggggcattgttaagtagcatgatgaccacttgaaaggaagcatgaca 380

                                                                       
Query: 181 cttttgttttattttgtttctttaaaaaaaatttattcattatgtatacagtgttcttcc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 cttttgttttattttgtttctttaaaaaaa-tttattcattatgtatacagtgttcttcc 439

                                                             
Query: 241 tacatatatgcctgcacaccagaaaagagcatccaatcccattacagatg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacatatatgcctgcacaccagaaaagagcatccaatcccattacagatg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)