BAC Information

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BAC

Clone NameMSMg01-159D16
Chromosome10 (Build37)
Map Location 98,028,647 - 98,029,299
singlet/doubletsinglet
Overlap genenone
Upstream geneLum, Kera, Epyc, 4921510H08Rik, EG667438
Downstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159D16.T7 (MSMg01no159_d16.b1)MSMg01-159D16.TJ (MSMg01no159_d16.g1)
ACCAG359229AG359230
length741740
length of high quality
(start - end)
700 (42 - 741)667 (74 - 740)
definitionCHROMAT_FILE: MSMg01no159_d16.b1 PHD_FILE: MSMg01no159_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:55 2005CHROMAT_FILE: MSMg01no159_d16.g1 PHD_FILE: MSMg01no159_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATGAAAATGAGGGTACTGCATACTGAAACTTATAGGACACTATGCAGG
CAGTGCTAATAGGAAAATACATAGCACTAAGTAACCTCATTAGAGAAAAT
TGGAGAGTTCCCATACTGACAAATTAAAAGATATCTAGAAAAAGAAGCAA
CCACACCCAGGAAGAGTAGATGGCAGGAAATAATTAAACTCAAGGCAGAA
ATCAATCAATGAGAAATAAGGAGAACAATATAAAGAATCAATGAAACTAA
GAGCTGATTCTTTGAGAAAATCAACTAGACAAATCCTTAGCCAAACTAAC
TAAAAGACAGAGAGATAGTCACCCAAATTAACAAAATCAGAAATGAAAAG
GGAAACAAAATAACAGACACTGAGGAAATTTAAAAAATTACTAGGTCTTA
TTTCAAAAGACTGTACCCACAAAATTGGAAACTCTAAATATAATGGATTG
TTTTCTAGACAGATACCAATTACCAAAGCTAAATCATGATCAGTAAACTA
TCAGAATAGTCCAACAACTCCTAATGAAATAGAAGCAGTCATTAAAAGTA
TCCCAACTATAAAAGGTCCTGGGCCAGACAGTTTTAATGCAGAATTCTAC
CAGACTTTCAAAGAAGAGCTAATGCCAATACTTCTAAAACTATTCCATAA
CATAGAAACAAAAAGAACTTTGCCAAACTCATTCTATGAAG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTTCTGAAGAAGAGAACCCTATGTT
GTAAGTATTGAGAAATTAACAATTCCCACTTAGCAGTCAAAGAGCAGATA
TAATGCACAAATCATTTTGCCTCATCTTTATCTACCCATAGTGATTAGTT
TATGAATAGGTACATGACCCAAACAAAACTAATGAGAATCTTTCTTTGGG
CTTTCCTTCAGTATATATTGGAAAAAGGTTCTCTTTCCTTTTAAGTAGGA
TAAAAGCCAGTCTGAGCATGAATCCAGGAAGCAGTGAACAGAGCCAGAAG
ATGCTAGATAGAAACTTGACTTGAAGCTCCTGGCACCAGCTGTGCTCAGA
GGCATGGTTACTTCTGAAAGTTCCAATTCCAATTCTATTTTGTACTTTAG
CCACTTTTAAATGAGTTTTGCATACAGAAAATGAATTATTATAGTTTGCT
GGGCTTGGGCAGTCACATACTTTGAATAAACATACTCGAAATTCATTAAA
GTTAGGTAAGTAAACACTATTTCCTATTGTATAGACAAAGATATTATAAT
TAAGAAAAATAAAAAGTTTAAAGTCTCAGCTGACGAGTAGCAAAGAAGAG
GACCGAACACAAATAAGATGAATAGGATGCCTAAATTTTTCCCGAAGAGT
CATTCTCTTTATTCAGATCCTTAATTGATGCATTGAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_d16.g1 MSMg01no159_d16.g1 CHROMAT_FILE:
MSMg01no159_d16.g1 PHD_FILE: MSMg01no159_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:55 2005
         (667 letters)



>mm_chr10_98028233_98029299
          Length = 1067

 Score = 1232 bits (637), Expect = 0.0
 Identities = 649/653 (99%)
 Strand = Plus / Minus

                                                                        
Query: 15   agaaccctatgttgtaagtattgagaaattaacaattcccacttagcagtcaaagagcag 74
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1067 agaaccctatgttgtaagtattgagaaattaacaattcccagttagcagtcaaagagcag 1008

                                                                        
Query: 75   atataatgcacaaatcattttgcctcatctttatctacccatagtgattagtttatgaat 134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 atataatgcacaaatcattttgcctcatctttatctacccatagtgattagtttatgaat 948

                                                                        
Query: 135  aggtacatgacccaaacaaaactaatgagaatctttctttgggctttccttcagtatata 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  aggtacatgacccaaacaaaactaatgagaatctttctttgggctttccttcagtatata 888

                                                                        
Query: 195  ttggaaaaaggttctctttccttttaagtaggataaaagccagtctgagcatgaatccag 254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  ttggaaaaaggttctctttccttttaagtaggataaaagccagtctgagcatgaatccag 828

                                                                        
Query: 255  gaagcagtgaacagagccagaagatgctagatagaaacttgacttgaagctcctggcacc 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  gaagcagtgaacagagccagaagatgctagatagaaacttgacttgaagctcctggcacc 768

                                                                        
Query: 315  agctgtgctcagaggcatggttacttctgaaagttccaattccaattctattttgtactt 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  agctgtgctcagaggcatggttacttctgaaagttccaattccaattctattttgtactt 708

                                                                        
Query: 375  tagccacttttaaatgagttttgcatacagaaaatgaattattatagtttgctgggcttg 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  tagccacttttaaatgagttttgcatacagaaaatgaattattatagtttgctgggcttg 648

                                                                        
Query: 435  ggcagtcacatactttgaataaacatactcgaaattcattaaagttaggtaagtaaacac 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  ggcagtcacatactttgaataaacatactcgaaattcattaaagttaggtaagtaaacac 588

                                                                        
Query: 495  tatttcctattgtatagacaaagatattataattaagaaaaataaaaagtttaaagtctc 554
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  tatttcccattgtatagacaaagatattataattaagaaaaataaaaagtttaaagtctc 528

                                                                        
Query: 555  agctgacgagtagcaaagaagaggaccgaacacaaataagatgaataggatgcctaaatt 614
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  agctgatgagtagcaaagaagaggaccgaacacaaataagatgaataggatgcctaaatt 468

                                                                 
Query: 615  tttcccgaagagtcattctctttattcagatccttaattgatgcattgaagca 667
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  tttcctgaagagtcattctctttattcagatccttaattgatgcattgaagca 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)