Query= MSMg01no160_j05.b1 MSMg01no160_j05.b1 CHROMAT_FILE:
MSMg01no160_j05.b1 PHD_FILE: MSMg01no160_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:34 2005
(628 letters)
>mm_chr10_102285394_102286421
Length = 1028
Score = 1199 bits (620), Expect = 0.0
Identities = 623/624 (99%)
Strand = Plus / Plus
Query: 5 gaattcctctctctgaacaagtgaggagaaaattctgacctataggcaatttctgaatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctctctgaacaagtgaggagaaaattctgacctataggcaatttctgaatta 264
Query: 65 gcataggcatactcaaaactagcttcctaatcacagagcctaatttgattcattatctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcataggcatactcaaaactagcttcctaatcacagagcctaatttgattcattatctcc 324
Query: 125 ttttattatatttcatttgggatttcatatcttgatcacatgataaaaacaataactaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttattatatttcatttgggatttcatatcttgatcacatgataaaaacaataactaca 384
Query: 185 tgtaaattgccaagaacagtggtcaacatgggtgtatcttccagactgatttttgctttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtaaattgccaagaacagtggtcaacatgggtgtatcttccagactgatttttgctttt 444
Query: 245 aacaacaggtgtcttactgttcacatatgtgccgatcatatacttgtgcttttggtaaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacaacaggtgtcttactgttcacatatgtgccgatcatatacttgtgcttttggtaaat 504
Query: 305 gtcttagagaagcctgtctggtttttaatgatttatcacttcaaattgttattttcaaac 364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 gtcttagagaagcctgtctggtttttaatgatttatcacttcaatttgttattttcaaac 564
Query: 365 tatgtccttgaaaaaacagagtgtatgtgctctgaatatttatgacaatactcctataca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgtccttgaaaaaacagagtgtatgtgctctgaatatttatgacaatactcctataca 624
Query: 425 ctattaagaaaagtgtgttctaaggaacaagacttttattctgactacatttttgagtgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctattaagaaaagtgtgttctaaggaacaagacttttattctgactacatttttgagtgt 684
Query: 485 ttatacatagatttcatttaaggaaaatgaaaaacagtttctgaaacttattaatactaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttatacatagatttcatttaaggaaaatgaaaaacagtttctgaaacttattaatactaa 744
Query: 545 tgatctttgcaggaatttttattagatgtcttatttatactttgacagttgttttattta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgatctttgcaggaatttttattagatgtcttatttatactttgacagttgttttattta 804
Query: 605 taagtcaaagaaatgcataataga 628
||||||||||||||||||||||||
Sbjct: 805 taagtcaaagaaatgcataataga 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_j05.g1 MSMg01no160_j05.g1 CHROMAT_FILE:
MSMg01no160_j05.g1 PHD_FILE: MSMg01no160_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:34 2005
(277 letters)
>mm_chr10_102401709_102402385
Length = 677
Score = 449 bits (232), Expect = e-130
Identities = 269/288 (93%), Gaps = 11/288 (3%)
Strand = Plus / Minus
Query: 1 ttgtccatgtattcagggtggagatgcctttagattttctttctgtgagcaggatgctta 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttgtccatgtattcagggtggagctgcctttagattttctttctgtgagcaggatgctta 295
Query: 61 aagtgaaaactccttttgcaagcctccttcatatcaatggtttttccctgaagatattat 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagtgaaaagtccttttgcaagcctccttcatatcaatggtttttccctgaagatattat 235
Query: 121 ttgaaatgctatttaaagc-----------tttttttttttttttggtaaaatcccaagt 169
||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 234 ttgaaatgctatttaaagctttttttttttttttttttttttttttgtaaaatcccaaga 175
Query: 170 tttgagctaagatatatggaaactcattaattgtttaggctattagtttttagatacatc 229
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 174 tttgagctaagatatatggaaactcaataattgtttaggctattcgtttttagatacatc 115
Query: 230 attactatgggaacatttatttttctgttccttacagaatcaatgttg 277
||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 114 attactatgggtacatttatttttctggtccttacagaatcaatgttg 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
