Query= MSMg01no161_c15.b1 MSMg01no161_c15.b1 CHROMAT_FILE:
MSMg01no161_c15.b1 PHD_FILE: MSMg01no161_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:28 2005
(283 letters)
>mm_chr10_56542369_56543052
Length = 684
Score = 501 bits (259), Expect = e-146
Identities = 276/285 (96%), Gaps = 7/285 (2%)
Strand = Plus / Minus
Query: 4 cacacacacacacacacacacacacacacac------agagagagagagagagagagaga 57
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 571 cacacacacacacacacacacacacacacacagagagagagagagagagagagagagaga 512
Query: 58 gagagagagagagagagagagagagagaggtacactaaagaatctaccttccatgaacac 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gagagagagagagagagagagagagagaggtacactaaagaatctaccttccatgaacac 452
Query: 118 cagactcctgcaacaggaagtaaaagctcaagacaagtgaccttctatgacaaatttccc 177
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cagactcctacaacaggaactaaaagctcaagacaagtgaccttctatgacaaatttccc 392
Query: 178 aaactgggcccaaaaataaccctcctgcgcataaaacaccaatccaatgcaaaaa-ccct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 391 aaactgggcccaaaaataaccctcctgcgcataaaacaccaatccaatgcaaaaaaccct 332
Query: 237 taccatctggatattgtcaggttcttgcaagtacataaaagaagg 281
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 taccatctggatattgtcaggttcttgcaagtacataaaagaagg 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no161_c15.g1 MSMg01no161_c15.g1 CHROMAT_FILE:
MSMg01no161_c15.g1 PHD_FILE: MSMg01no161_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:28 2005
(312 letters)
>mm_chr10_56460042_56460753
Length = 712
Score = 588 bits (304), Expect = e-172
Identities = 310/312 (99%)
Strand = Plus / Plus
Query: 1 gcggagaataaggggaaataatctgaccttgtttattttaagttttccactttaatttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcggagaataaggggaaataatctgaccttgtttattttaagttttccactttaatttgt 260
Query: 61 attaagaacagaccatggtaggtaaaaagtgaaatcaaagatgtcagttttttgaaggta 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 attaagaacagaccatggtaggtaaaaagagaaatcaaagatgtcagttttttgaaggta 320
Query: 121 ggatcattgccaagttgtataagaggattatttgtagaaaagaaaaagaaacaaggatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatcattgccaagttgtataagaggattatttgtagaaaagaaaaagaaacaaggatga 380
Query: 181 ttattaagtgaaattaactggctgaataatggttttaataacttgcctgagtagagggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttattaagtgaaattaactggctgaataatggttttaataacttgcctgagtagagggtg 440
Query: 241 aacttgaagcttcagaggttgatttttattgctttggagagagctttttgtgcagaagaa 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacttgaagcttcagaggttgatctttattgctttggagagagctttttgtgcagaagaa 500
Query: 301 aggagagggatg 312
||||||||||||
Sbjct: 501 aggagagggatg 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
