BAC Information

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BAC

Clone NameMSMg01-162A12
Chromosome10 (Build37)
Map Location 18,266,569 - 18,266,749
singlet/doubletsinglet
Overlap genenone
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2
Downstream geneEG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162A12.T7 (MSMg01no162_a12.b1)MSMg01-162A12.TJ (MSMg01no162_a12.g1)
ACCAG361278AG361279
length748776
length of high quality
(start - end)
310 (44 - 353)181 (72 - 252)
definitionCHROMAT_FILE: MSMg01no162_a12.b1 PHD_FILE: MSMg01no162_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:19 2005CHROMAT_FILE: MSMg01no162_a12.g1 PHD_FILE: MSMg01no162_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCACATCTGTAATTTAAATTAACACTTTTAATAAATACTCTCATAT
GATCTCACATTTCTTTTCCCCTTTTAACATTTTTTTAAAAAATTTACTTA
TTTTATTTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGG
GCATCGGATCCCATTACATATGATTGTGAGCCACCACGTGGTTGCTGGGA
GTTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTAACTGCTGAGC
CATCATCTCTCCTGTTCTGCTCTCACATTTCTAAAACAGAAGAGAAGCAG
GTAATTTTTTTAGAGCCCCCCCCCGCCCGCGCTAATGTGGTGGTTAAAGG
GCAAGCACGGCCCCCCCCTGACAAAAATGTGTAATGGGTGATGTAGGGAG
TGCTCCTCCCCGGCCTGATATATTACCCGCTGGTTTTGTTGTTCCTCGTG
TTCCGCTCTTTAAATCTGGCTCTATTGCTTGTCCTGCCTTTGTGTTATTA
CTAATCTATGTATTCCTCTCTTCCCATAGTTTTCCTTGAGCTTCTTGTTC
TCTTGTTCTCTTTACATGACTCGATCTCCCTCTCTTATACATTCCTCCCG
TACTACGGATCTGATTGTTTACCTCTCCCCCATAGCCTTTATTTACCTCC
CCTCCAACACACCTTCTCTTATAATTTAGCCGTCCTATTTTCTCCCCG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTATCAGTAACGGGTTGCTGGGACCTAG
AGACTCATTTCTTTTCACGAGTGTGAGCATGGGTTTTCAGTGCCTCAGTG
ATAGACTCCAGCCTAAGTGCATGTGAGTTGAACTAGCTGAATCCAGTGAG
CTAAATAAATACTCAAAGAATTTTGGAAGGAAGATGTGATGGGGTGGAGG
TGCTTCACTTAACTCCATTCCCCTCCCCACCTCTTGCATTCTTTCCCTCT
CACTCCATTCTTTTTTTTTCACCCCCCCAACTTCATTTTATTTAAATTAA
TATTTTTTTTTTTTTTCCCCCCCCCCCCCCCTCTTTTTTTTCTCTTCTTT
TTTTTTTTTTTTTTTTTTTCTCCCCCCACAAAAAAAATAAACTTTTTTTT
TGAGCGTAGTACCACACGTTTTTTTTTTATTTCTCTCTTCCCATTTTCCT
TTATTTTTTAAATCTCCCTTCTTCCCCCTTTTTTTTTTTTTCTCTCACTT
TATTTTCTTCTTTCTCCTCACACTATAATTCCTTATCTCCGTCCCATTCT
TTTTCCCCTTTCATTTTTTTCCCCTCCTTCTAGACCCACCCCTCCTACTC
ACACTTCCCTCCCCTCCCTTCCCCTTTCCTTTTTGTTTCGTTTATCTTCC
TTTCCCTTTCCTTTTTCTGATCTCGCTTTTTCCCCCCTCCCCCTTCTCTT
TTAATTATTTCCCCCCCCCTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_a12.g1 MSMg01no162_a12.g1 CHROMAT_FILE:
MSMg01no162_a12.g1 PHD_FILE: MSMg01no162_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:19 2005
         (181 letters)



>mm_chr10_18266369_18266949
          Length = 581

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatcagtaacgggttgctgggacctagagactcatttcttttcacgagtgtgagcatg 60
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 381 tttatcagtaacgggttgctgggacctagagactcatttctttttaggagtgtgagcatg 322

                                                                       
Query: 61  ggttttcagtgcctcagtgatagactccagcctaagtgcatgtgagttgaactagctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttttcagtgcctcagtgatagactccagcctaagtgcatgtgagttgaactagctgaa 262

                                                                       
Query: 121 tccagtgagctaaataaatactcaaagaattttggaaggaagatgtgatggggtggaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagtgagctaaataaatactcaaagaattttggaaggaagatgtgatggggtggaggt 202

            
Query: 181 g 181
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)