BAC Information

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BAC

Clone NameMSMg01-162M16
Chromosome10 (Build37)
Map Location 126,097,385 - 126,231,902
singlet/doubletdoublet
Overlap genenone
Upstream geneLrig3, LOC100043547
Downstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162M16.T7 (MSMg01no162_m16.b1)MSMg01-162M16.TJ (MSMg01no162_m16.g1)
ACCAG361806AG361807
length692719
length of high quality
(start - end)		308 (47 - 354)225 (78 - 302)
definitionCHROMAT_FILE: MSMg01no162_m16.b1 PHD_FILE: MSMg01no162_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:15 2005CHROMAT_FILE: MSMg01no162_m16.g1 PHD_FILE: MSMg01no162_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,097,385 - 126,097,688)(126,231,678 - 126,231,902)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGCACCAAAGCGTTCTTTGGATGATGGTACCTAAATCTCAGAC
AGATGGCCTGAGCCCGCTAAACGCTTTCCTTGGTTCATTTTTCTTTTCAC
AGTTATGGGGCTTCTAGGACTGGCTAAGAGACAGAACTATAAGCATTCAC
CATCCATGTTATTAAATACCGTATTTATTTTATGTCATTTCCACTATTAT
GCCAGTATATATTAGAAGAGGAGACATCCAGAACTTGGCACCATCATAGT
GTTCCCAGACGTTTATTTCTATAGCTAAATGCTTTATATTTTATAAGATA
AAGTTTTGTTATACCATGTCCGTTNCCGCAGGGGTGTTGGGCTGAGAAAC
ATTTAATAGGACCCCCAAAGAATACATTGTGTTTCAGATATTTGAATTGT
TTTATAAAACCTTTTTTAAAAAAATGGTCTGGGGAGATGACTCACTTGAT
AACACCCCAACTCTACAAACTTAAGGACCCGAGTGTAGATCTCTACACCC
ACATAAACAGCCTGGCACGGTGGCAACCCTCTGTAATCCCAGTACATGGA
AGCAGGAGACAGGAGGGCCTCTGCGGCTTGCTGTCCAGCTAATCTTCTCA
AATCTGTGAGCTCTAGGCTCAGTGTAAGACCCTGTATCAAAA

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGGGAGACAAAGACGTTATA
AATAGAAATTTACTTAGCAAAGGAAAAGCAAAGTGTATTTGAGAGAGACT
GGAGTGGGCTGCCCTGAGGGTCAGGGAACAGGAAGTTCTCGGGTGTTGAG
TTTGAGCGGGTTTTATGAACACAGGGGAGGTATGTATGTTTATTGGGTAA
AGTAATGCTTTTCCCCTTCCCAAATTATGATGAGGTATTTCTTGATTTTT
TTTCCAGAAAAGTTTTTTTTTTTGGGGATCAAAATCCCAATGTAAANAGA
ATTATTTTTTTGTTTCCCAAAGACAGAGACCCCGGAAAGGAGAGATAAGA
GGGAAGGGNGNAGAACCCCCCCCATAAAAAAAAAATTTGTGGGGGGGGGG
TGGTTTTGTCTCCCACCTCCCGTCTCTTTTTTCTTTCTCCCCACTTCTTT
TTATACTCTTTACGCTTTAATATCCCATCTCTCTGGTGTTTTACTTATTT
ATTTGAATGTTATTACTTCCCTGTTTTTTTCTCACCTTTTCTACTCCATG
TCTCCTCTTTTCTTTCCCCCTTTATCATTTTTTTAATTACGTTTACTCTT
TTACCGCATTCATATTTTTCGCCGTTTTTGCGGTCCTCCTTCTTTTCTTT
TTTCCTCTCCCTCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_m16.b1 MSMg01no162_m16.b1 CHROMAT_FILE:
MSMg01no162_m16.b1 PHD_FILE: MSMg01no162_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:15 2005
         (308 letters)



>mm_chr10_126097181_126097888
          Length = 708

 Score =  572 bits (296), Expect = e-168
 Identities = 302/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgcaccaaagcgttctttggatgatggtacctaaatctcagacagatggcctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgcaccaaagcgttctttggatgatggtacctaaatctcagacagatggcctg 264

                                                                       
Query: 65  agcccgctaaacgctttccttggttcatttttcttttcacagttatggggcttctaggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 agcccgctaaacgctttccttggttcatttttcttttcacagttatgggccttctaggac 324

                                                                       
Query: 125 tggctaagagacagaactataagcattcaccatccatgttattaaataccgtatttattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggctaagagacagaactataagcattcaccatccatgttattaaataccgtatttattt 384

                                                                       
Query: 185 tatgtcatttccactattatgccagtatatattagaagaggagacatccagaacttggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatgtcatttccactattatgccagtatatattagaagaggagacatccagaacttggca 444

                                                                       
Query: 245 ccatcatagtgttcccagacgtttatttctatagctaaatgctttatattttataagata 304
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatcatagtgctcccagacgtttatttctatagctaaatgctttatattttataagata 504

               
Query: 305 aagt 308
           ||||
Sbjct: 505 aagt 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no162_m16.g1 MSMg01no162_m16.g1 CHROMAT_FILE:
MSMg01no162_m16.g1 PHD_FILE: MSMg01no162_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:15 2005
         (225 letters)



>mm_chr10_126231478_126232102
          Length = 625

 Score =  397 bits (205), Expect = e-115
 Identities = 220/225 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgggagacaaagacgttataaatagaaatttacttagcaaaggaaaagcaaagtgta 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agttgggagacacagacgttataaatagaaatttacttagcaaaggaaaagcaaagtgta 366

                                                                       
Query: 61  tttgagagagactggagtgggctgccctgagggtcagggaacaggaagttctcgggtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 365 tttgagagagactggagtgggctgccctgagggtcagggaacaggaagttctccggtgtt 306

                                                                       
Query: 121 gagtttgagcgggttttatgaacacaggggaggtatgtatgtttattgggtaaagtaatg 180
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 305 gagtttgagcgggttttatgaacacaggggaggtaggtatgtttattaggtaaagtaatg 246

                                                        
Query: 181 cttttccccttcccaaattatgatgaggtatttcttgattttttt 225
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cttttctccttcccaaattatgatgaggtatttcttgattttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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