BAC Information

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BAC

Clone NameMSMg01-162P19
Chromosome10 (Build37)
Map Location 111,465,768 - 111,466,055
singlet/doubletsinglet
Overlap geneEG639527
Upstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1
Downstream geneGlipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2, LOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162P19.T7 (MSMg01no162_p19.b1)MSMg01-162P19.TJ (MSMg01no162_p19.g1)
ACCAG361940
length709712
length of high quality
(start - end)
---288 (80 - 367)
definitionCHROMAT_FILE: MSMg01no162_p19.b1 PHD_FILE: MSMg01no162_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:28 2005CHROMAT_FILE: MSMg01no162_p19.g1 PHD_FILE: MSMg01no162_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GAAGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXX
NTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCGCCCAGTGAGTGGTAC
AAACGCTTCCCTATATAAGCCTGGAACCAGTCCAAAATGAAGAATTAAGC
ACTTAGAATACCAAAGGTGACTTCTTTCATTCACCAAGTTGACGAGGAAG
CATGGTTTAGGCACACAGCAATAATAGGGTAAGTGTTTGGCACTAGACTC
ACACAGACTAATTGTTTCTTTGTACAGAAGAGAAACCTGCAAAGTTCAGG
TCAGGGGTGAAATGTGTGTCTGCAGGAAGCTGCCTCCAGAGGGAAGAGAA
GAGAGAGGGCTACGCTGTTTTATACCACCCCCCGCCGCCCGTTATGAAGC
GGAGAGCCTTCCTTCTCCTTTGGAGACAACAAAGGAGATGGAAGCCATGC
TAAAATCCTAATGAAGAAACCCCATGGGGTTTGTCTGAGCCGGATTGACT
TTAAACAAGCGGCAAGGACTTGTTATGAAGCAATACTAAGACAGGTGCAA
GAATCCAGAGAGGAGACTGAAAAGCGGGGTCCAAGTTATCTGCGCAGTTA
TGACAGTTTGACATGCGATATAGGAAAACTCAAAATTCAGGGGGATATTT
ACTTTCAAGTAGGCTTAGACTTATCAAGGGAAGATACGAAAGGCACTAAC
CACGTTACAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_p19.g1 MSMg01no162_p19.g1 CHROMAT_FILE:
MSMg01no162_p19.g1 PHD_FILE: MSMg01no162_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:29 2005
         (288 letters)



>mm_chr10_111465568_111466255
          Length = 688

 Score =  511 bits (264), Expect = e-149
 Identities = 282/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcgcccagtgagtggtacaaacgcttccctatataagcctggaaccagtccaaaatg 60
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 caggtgcccagtgagtggtacaaacgcttccctatataagtctggaaccagtccaaaatg 260

                                                                       
Query: 61  aagaattaagcacttagaataccaaaggtgacttctttcattcaccaagttgacgaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 261 aagaattaagcacttagaataccaaaggtgacttctttcattcaccaagttggtgaggaa 320

                                                                       
Query: 121 gcatggtttaggcacacagcaataatagggtaagtgtttggcactagactcacacagact 180
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 gcatggtttgggcacacagcaataataggggaagtgtttggcactagactcacacagact 380

                                                                       
Query: 181 aattgtttctttgtacagaagagaaacctgcaaagttcaggtcaggggtgaaatgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattgtttctttgtacagaagagaaacctgcaaagttcaggtcaggggtgaaatgtgtgt 440

                                                           
Query: 241 ctgcaggaagctgcctccagagggaagagaagagagagggctacgctg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcaggaagctgcctccagagggaagagaagagagagggctacgctg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)