BAC Information

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BAC

Clone NameMSMg01-164B02
Chromosome10 (Build37)
Map Location 109,015,741 - 109,016,033
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt1, EG368203
Downstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164B02.T7 (MSMg01no164_b02.b1)MSMg01-164B02.TJ (MSMg01no164_b02.g1)
ACCAG362669AG362670
length712715
length of high quality
(start - end)
319 (54 - 372)634 (82 - 715)
definitionCHROMAT_FILE: MSMg01no164_b02.b1 PHD_FILE: MSMg01no164_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:48 2005CHROMAT_FILE: MSMg01no164_b02.g1 PHD_FILE: MSMg01no164_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTATACTTACATGTATAAGTGTGAACATTCAGGCCCG
AATGGGTAGATCCTGAAATTTCCCATGCTTCCAGATGATGTCGGTGCCTC
TCGTTAGTGGCCTTTCCTTGGGTACCAGGAGCTCATTCACTGGCTAGGGA
CCTGAAGCTGGCTCTGGACTCACCCATTTAATCCCTTCCACCTTGCTCTC
TAATTACATAAGTGTGGACAAATCATTCAAGCACTCAAATCCTATCTCCT
CCCTTGTTAGGCAATATAAGGAGGGATGTGTTTTACTGCCTTGTCATGGA
GAAAACAGGCATGAGTTCATACACATAACACACATTGGAAACTTCCTTAC
GCCTTGATGAAGCTGAAGAGGGCTGGAAATTATTGGCAAAACTATATCTG
ATTTTTATAAAACTTCAGCTTCCAATTGTTCTTTTCACCATGCCCATCAT
CATCTACTTTCCAATAGTACATTTCTATTTGAACTTCCCTCATTAGCATG
CAGAAACTCCTGGAAAACAAGTATCATGTCTTCATTTACCATCTGTTCTA
GGTAATGTAATGTGAGCTAGCATTAGAGTGTTCACTGTGGTGACTGGTAC
AATGATGCTAAATACTTGTTGAATTAATGACACTTAAAACTTTTGTCCTC
TCCTAATTCACT
NCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTGCATTGTTGGTGGAATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCAG
AGGATCCAGCAATACCTCTCCTGGGCATGTATCCAGAAAATGTCCCAACC
AGTATGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AACCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAGCACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATAC
AATTTGCTAAACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_b02.b1 MSMg01no164_b02.b1 CHROMAT_FILE:
MSMg01no164_b02.b1 PHD_FILE: MSMg01no164_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:48 2005
         (319 letters)



>mm_chr10_109015515_109016233
          Length = 719

 Score =  520 bits (269), Expect = e-152
 Identities = 287/293 (97%)
 Strand = Plus / Plus

                                                                       
Query: 27  aagtgtgaacattcaggcccgaatgggtagatcctgaaatttcccatgcttccagatgat 86
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 227 aagtgtgaacattcaggtccgaatgggtagatcctgaaatttcccatgcttccaggtgaa 286

                                                                       
Query: 87  gtcggtgcctctcgttagtggcctttccttgggtaccaggagctcattcactggctaggg 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtcggtgcctctcgttagtggcctttccttgggtaccaggagctcattcactggctaggg 346

                                                                       
Query: 147 acctgaagctggctctggactcacccatttaatcccttccaccttgctctctaattacat 206
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 347 acctgaagctggctctggactcacccatttaatcccttccaccttgttccctaattacat 406

                                                                       
Query: 207 aagtgtggacaaatcattcaagcactcaaatcctatctcctcccttgttaggcaatataa 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aagtgtggacaaatcattcaagcactcaaatcctatctcctcccttgttaggcaatataa 466

                                                                
Query: 267 ggagggatgtgttttactgccttgtcatggagaaaacaggcatgagttcatac 319
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 467 ggagggatgtgttttacttccttgtcatggagaaaacaggcatgagttcatac 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)