BAC Information

Click to search

BAC

Clone NameMSMg01-164F18
Chromosome10 (Build37)
Map Location 12,224,890 - 12,225,200
singlet/doubletsinglet
Overlap geneUtrn
Upstream geneEG666732, LOC100039343
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164F18.T7 (MSMg01no164_f18.b1)MSMg01-164F18.TJ (MSMg01no164_f18.g1)
ACCAG362861AG362862
length718714
length of high quality
(start - end)
316 (51 - 366)603 (78 - 680)
definitionCHROMAT_FILE: MSMg01no164_f18.b1 PHD_FILE: MSMg01no164_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:11 2005CHROMAT_FILE: MSMg01no164_f18.g1 PHD_FILE: MSMg01no164_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTTCCTCACAACTTTACCTAAGCTTGTTATTGTTTGGAT
AGAGGGTTGTTTTCGGTAAAAATATAAAGTCATTAACACAGAAAAATTCC
AATTAGGTTATCTTATACTCATTTAAGTGGCTCCCAAATGAGACACGAGA
TACCAGAAAGTGGATGCTACTTTGTATACAAAACAACTCATTGGACTCTA
ATTACCTTATCATTAATGCTCAGGAAAGTGAAGGCTTTCTTTTACGTCGA
ATGGAGAGGTAAAAGGTGTGGTGATTATGTGTGTAATGCAGTTGAGAGTC
GAATCCCTTTGTGAGTTTATTTATATACCCCCGCCCCCACGGCAAATTGA
ATAACAAAATTAAAACGTCAAAAGACCGCACGAACAGGAATACTGAGTGT
GTTCTCCAGGCTACTGGGGAGAGAGATGGTATCAGGGTCAGAGTCCCAGA
AGTTTTTACTTAGGGTGCTTTCCACCTGCCCATGCCTGCTGTACTTCTTC
TCTGGCTTATCAAGTCAGCTCACCTGATATTCTTTACCAAGAATTCAATG
CTGGGTGATTCCCCCCCTCCCCCAACACATACCTTTGGCAGGTTGTAGAT
TAATGTGCTAAGGAATGCAAATTAACTATGGAAGACTCTCTACTACTCTG
ATTTCGCTNTTATTATCA
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCCGCCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTACCCCCATAGCAGCATTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATATGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAATTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACTATTT
CCTAAACACATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_f18.b1 MSMg01no164_f18.b1 CHROMAT_FILE:
MSMg01no164_f18.b1 PHD_FILE: MSMg01no164_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:11 2005
         (316 letters)



>mm_chr10_12224686_12225400
          Length = 715

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttcctcacaactttacctaagcttgttattgtttggatagagggttgttttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 515 gaattcagttcctcacaactttacctaagcttgttattgtttggataga-ggttgttttc 457

                                                                       
Query: 65  ggtaaaaatataaagtcattaacacagaaaaattccaattaggttatcttatactcattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggtaaaaatataaagtcattaacacagaaaaattccaattaggttatcttatactcattt 397

                                                                       
Query: 125 aagtggctcccaaatgagacacgagataccagaaagtggatgctactttgtatacaaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagtggctcccaaatgagacacgagataccagaaagtggatgctactttgtatacaaaac 337

                                                                       
Query: 185 aactcattggactctaattaccttatcattaatgctcaggaaagtgaaggctttctttta 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 336 aactcattggactctaattaccttatcattaatgctcaggaaaatgaaggctttctttta 277

                                                                       
Query: 245 cgtcgaatggagaggtaaaaggtgtggtgattatgtgtgtaatgcagttgagagtcgaat 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 276 cgtcgaatggagaggtaaaaggtgtggtgattatgtgtgtaatacagttgagagtcgaat 217

                       
Query: 305 ccctttgtgagt 316
           ||||||||||||
Sbjct: 216 ccctttgtgagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space:   216742
Effective search space used:   216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)