BAC Information

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BAC

Clone NameMSMg01-164L17
Chromosome10 (Build37)
Map Location 51,316,616 - 51,316,829
singlet/doubletsinglet
Overlap genenone
Upstream geneAscc3, Sim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik
Downstream geneGprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164L17.T7 (MSMg01no164_l17.b1)MSMg01-164L17.TJ (MSMg01no164_l17.g1)
ACCAG363111AG363112
length740737
length of high quality
(start - end)
320 (45 - 364)214 (438 - 651)
definitionCHROMAT_FILE: MSMg01no164_l17.b1 PHD_FILE: MSMg01no164_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:40 2005CHROMAT_FILE: MSMg01no164_l17.g1 PHD_FILE: MSMg01no164_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGGTCTTACCACGTTCCCCATCATCCTGAAGCAGCTGGTCTGAT
AGAAAGATGGAATGGCCTTTTGAACACGCAGTTACAGCGCCAATTAGGTG
GTAACAGCTTGGAAGGCTGGGGTAGAGTTCTTCAGAAGGCAGTATATGCT
TTGAATCAGCGCTTGATATATGGTACAGTTTCACCCATAGCCAGGATTCA
TGGTTCCAGGAATCAAGGGGTGGAAAATGGAATAGTTCCACTCACTATCA
CTCCTAGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCATAACTCTA
GGTTCTGCTGGCTTATATGTTTTGGCTCCCCAGAGGGGAGTGCTCCTACC
AGGAGCTACAACAAACACCCCATTGAACTGGAAGCTCAGACTTCCCCCTG
GTCATTTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATA
ACAGTGTTAGGAGGGGTGATAGATCCAGATTACCATGGGGAAATTGGATT
ACCTCTTCACAATGGTGGTAAACAAGATTATGTCTGGAGTGTAGGAGATC
CCTTAGGGCATCTCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGG
AAACTACAACAGCCTAATCCAAGCAGGATGATAAAGGACGCAGACCCATC
ACGAATGAAGGTATGGGTCAATCCTCCAGGAACAGAGTCA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAATACCACAGGTGACCTGCCACTAGAACAGCGGC
TCACACACAGTGCATTTGACCCCAAGATTTCTGGAATTTTATATGAACAC
TTCTTGCATGTCCTTGCCATACACTGTTTAAACGTGAAGGAAAAGAAGAG
CCAGAAAGAATAAACTATCTTACAGACAGTCAAATGAAAAGGTTCCACTC
GCATCACAAACCTGTTTCTCCAGTAAGATGAAAGAAGATGTGACAAGGAG
GAAAGACTGCATTGCATCTTTCTTTCTCATGAGCAGGAAAATAGGTGGGC
TTAGCATGTCCAGTGCCTACGGAACCAGNGGCCTACNATANAATATAAAT
AGAAGGATGAGGCACACCAATTCAAATNCAAGAAAACTCTGGAGGAAGCC
TCTGATTCAGAAATTCCACAGTTAAACTTTAAACCTCTAAAAACAGGTTC
TTTCCAATACAGAGACATATTTACAAAGTGTTCTTTACAAAATCCTTAGA
TAATAGAAAGCTTTGAAAATTGAAAATTTTAAACCTATACAACTAAATAA
ATTATGGTACACTTTCTCAATGAAAGACCAATTTTAAAAACATTTTAGAG
TGAGGGTAAATTTACAGGAATAAGTATTTAAAGTCCCTACATGCAATTTA
TGAAGAAAGAATAAGTTGAATAAGTGTAATTCTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_l17.g1 MSMg01no164_l17.g1 CHROMAT_FILE:
MSMg01no164_l17.g1 PHD_FILE: MSMg01no164_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:40 2005
         (214 letters)



>mm_chr10_51316416_51317029
          Length = 614

 Score =  406 bits (210), Expect = e-118
 Identities = 213/214 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggaggaagcctctgattcagaaattccacagttaaactttaaacctctaaaaacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tctggaggaagcctctgattcagaaattccacagttaaactttaaacctctaaaaacagg 355

                                                                       
Query: 61  ttctttccaatacagagacatatttacaaagtgttctttacaaaatccttagataataga 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 354 ttctttccaatacagagacatatttacaaagtgttatttacaaaatccttagataataga 295

                                                                       
Query: 121 aagctttgaaaattgaaaattttaaacctatacaactaaataaattatggtacactttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagctttgaaaattgaaaattttaaacctatacaactaaataaattatggtacactttct 235

                                             
Query: 181 caatgaaagaccaattttaaaaacattttagagt 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 caatgaaagaccaattttaaaaacattttagagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)