Query= MSMg01no166_c02.b1 MSMg01no166_c02.b1 CHROMAT_FILE:
MSMg01no166_c02.b1 PHD_FILE: MSMg01no166_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:32 2005
(461 letters)
>mm_chr10_98505867_98506727
Length = 861
Score = 775 bits (401), Expect = 0.0
Identities = 434/449 (96%), Gaps = 9/449 (2%)
Strand = Plus / Minus
Query: 5 gaattctcttctactatgtcctcgtggaaatgcacaaaaaaatgtgcctgtcatctaccc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattctcttcta-------ctcgtggaaatgcacaaaaaaatgtgcctgtcatctaccc 613
Query: 65 agattttccgagtgcttggctgttacagtgaagatggaaaagaacaagaagtaactcacc 124
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 612 agattttctgagtgcttggctgttacagtgaagatggaaaagaacaaggtgtaactcacc 553
Query: 125 cgagaattctggggatgttatctgtgaagcaacccaacagaagcataaaacagtgtctta 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgagaattctggggatgttatctgtgaagcaacccaacagaagcataaaacagtgtctta 493
Query: 185 ccatcgatgctatctagtaattctgagcactgactggcctcatttaggagggtcacactc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccatcgatgctatctagtaattctgagcactgactggcctcatttaggagggtcacactc 433
Query: 245 agagcctggggttatttcaaaggcattttcgttcgagcatggtggctgatgctggccatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agagcctggggttatttcaaaggcattttcgttcgagcatggtggctgatgctggccatc 373
Query: 305 acatggccattcgcaggatcagaggctgacattctttggcagcttttca-gatacatcac 363
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 372 acatggccattcgcaggatcagaggctgacattctttggcagcttttcacg-tacatcac 314
Query: 364 actgtctaaacagcatcctgttctgagagcaagtgcttcaagatgttcaccctgcatgag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actgtctaaacagcatcctgttctgagagcaagtgcttcaagatgttcaccctgcatgag 254
Query: 424 agcggggtgtgtgtgtgtgtttatgtgtg 452
|||||||||||||||||||| | ||||||
Sbjct: 253 agcggggtgtgtgtgtgtgtgtgtgtgtg 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_c02.g1 MSMg01no166_c02.g1 CHROMAT_FILE:
MSMg01no166_c02.g1 PHD_FILE: MSMg01no166_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:32 2005
(534 letters)
>mm_chr10_98408557_98409490
Length = 934
Score = 971 bits (502), Expect = 0.0
Identities = 523/534 (97%), Gaps = 7/534 (1%)
Strand = Plus / Plus
Query: 1 tgaaattctgaaacctgagggtttgatactatagagaagaaatgagtactcacttacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgaaattctgaaacctgagggtttgatactatagagaagaaatgagtactcacttacagt 267
Query: 61 ttggaaccaggagagggatcacagaagcactgaaggagttggcccatgcacttaagggag 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 268 ttggaaccaggagaggga-------agcactgaaggagttggcccatgcacttaagggag 320
Query: 121 gaagtggctttatgccactactgtattcttttgaagagagtgtcaaggtgggtacattgg 180
|||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gaagtggctttacgccactactatattcttttgaagagagtgtcaaggggggtacattgg 380
Query: 181 ttctgtggcattttcagtttaaaatgagggaagcgtaagttccattttaagcttggactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgtggcattttcagtttaaaatgagggaagcgtaagttccattttaagcttggactg 440
Query: 241 tgtacttccatttaaaatgtagtggatcagtgattgccgttggagaattaaaaggagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtacttccatttaaaatgtagtggatcagtgattgccgttggagaattaaaaggagaat 500
Query: 301 atttgctagacaaattaatctcagttggagactattccttaaaatattcattaatgtact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgctagacaaattaatctcagttggagactattccttaaaatattcattaatgtact 560
Query: 361 ggaaagatttggggaaggtataatcactgcctcccacttgcccacacacaattgaaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaagatttggggaaggtataatcactgcctcccacttgcccacacacaattgaaatta 620
Query: 421 aactcctgtggataaatcactcaaaacagctgggctctacacaggagcgtctcagaatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 aactcctgtggataaatcactcaaaacagctgggctctacacaggagcgtctcagaagct 680
Query: 481 aggcccaagatccgtgtaaaatactaggtgtttaatgtcctacagagtctgtgt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcccaagatccgtgtaaaatactaggtgtttaatgtcctacagagtctgtgt 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
