BAC Information

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BAC

Clone NameMSMg01-169D09
Chromosome10 (Build37)
Map Location 58,816,698 - 58,915,682
singlet/doubletdoublet
Overlap geneP4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a
Upstream geneLims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57, LOC664892
Downstream geneLOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169D09.T7 (MSMg01no169_d09.b1)MSMg01-169D09.TJ (MSMg01no169_d09.g1)
ACCAG366150AG366151
length717717
length of high quality
(start - end)
310 (46 - 355)339 (379 - 717)
definitionCHROMAT_FILE: MSMg01no169_d09.b1 PHD_FILE: MSMg01no169_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:50 2005CHROMAT_FILE: MSMg01no169_d09.g1 PHD_FILE: MSMg01no169_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,915,382 - 58,915,682)(58,816,698 - 58,817,036)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAACTCTTTGATGTATTCTTTCCAGTCAGTCAGCAAAATTTTT
AAAATGGCATTTCCCTATGGATTTTGCATTTCTTTGATTATGAAAAGATT
AAGCCCTCTAACATCTGCAAAAATGTCTGTGCACCTTTTTCCGAGGTGAA
TCATATATTTTATATCAAAAAGCATGAATATATAGCCACTCATTTAGTTA
GTCTCAATTCTGTAACTACATACCCATTCTACAGATGAAGAAGTAAGGCT
TGTTAGGAAAAGAATTATATGTTGAAAACCGTAGGCCCAGGAACTGAACC
CAAGTGTGTCTTGTTCCCCCANTTCCATCCCTGATAAATGTTTATATCCC
GTTTCCCTCTGTTGAGCTCATTTGAGAGTAGATATTTCTGAAGACGAAAT
CACCTGGATCTAGAATAACAGTAGAAATACCAGCGGCGGGGGCTGCAGGG
ATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCTTGAGTTC
AATTCCCAGCAACCACACGGTGGCTCACAGCCATCTGTAATGAGATGGGA
TGCCCTCTTCTGGTGTGTCTGAAAACAGCTACAGCGCACTTACATATACC
ACATAAATAAATCTTTAAGAAATAAAATGGCCAGGTAAGTTTAGGCAACG
CCCCGGTAATTCTCCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTTTGAGATGGAAGGCCCCAGGC
TTCATAGGAAATGTTTTACTCGAGATTATTTTTGAGCAGTAAATTTAGTG
GCAGTGAAAGTTAATTTTTCTGTTATTTCAGCATCAACCTCCCATTTAAA
TTTTTTTTTTTATTCTCTTGGCTGTCAGCATTTCTGTTAAGACTATGCAT
TCCTTTTACCTGCATGGCTGTGGAAAGGCTGTTTTACTGTACATACTGTT
AAGTACACACTTTCTCTTAAAAAGAGGAAAGAATGACCTTAAAATAAGTT
TTAGACTTTTTTGGGACCCCCTCCCCCTGTTGTCACGAGTCACAATCTGA
GGTTTTAGAGTCCATGATTAATTAGTTACAAATGGCCATTTTTATAATAT
CAATGGTAATTTGCATTTTAGAGCCTTTTCTTCATGTTATCAATGTTCTA
TCCTACTGAAGAAATTAATTCCAACCTTTTCTGTTTGTGTGACCTCTATT
CACGCAGTGAAAAGCAAGTAAAATAGTTTTTAAGAAACATAAAACTAACT
GGCTTTCAAGGCGCGACACAAGGTGATTGGAAGGGTATTGAGTTATTTTC
TATTCACCCTCTTTTGTTTAAAGAAGAAAGAAAAGAAAACCCAGCATTGT
GGCTGGTTAGGGAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_d09.b1 MSMg01no169_d09.b1 CHROMAT_FILE:
MSMg01no169_d09.b1 PHD_FILE: MSMg01no169_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:50 2005
         (310 letters)



>mm_chr10_58915177_58915886
          Length = 710

 Score =  567 bits (293), Expect = e-166
 Identities = 299/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcagaaactctttgatgtattctttccagtcagtcagcaaaatttttaaaatggcat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aattcagaaactctttgatgtattctttccagtcagtcagcaaaatttttaaaatggcat 447

                                                                       
Query: 66  ttccctatggattttgcatttctttgattatgaaaagattaagccctctaacatctgcaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 446 ttccctatggattttgcatttctttgattatgaaaagattaagccctctcacatctgcaa 387

                                                                       
Query: 126 aaatgtctgtgcacctttttccgaggtgaatcatatattttatatcaaaaagcatgaata 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaatgtctgtgcacctttttccgaggtgaatcatatattttatatcaaaaagcatgaata 327

                                                                       
Query: 186 tatagccactcatttagttagtctcaattctgtaactacatacccattctacagatgaag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tatagccactcatttagttagtctcaattctgtaactacatacccattctacagatgaag 267

                                                                       
Query: 246 aagtaaggcttgttaggaaaagaattatatgttgaaaaccgtaggcccaggaactgaacc 305
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 266 aagtaaggcttgttaggaaaagaattacatgttgaaaaccgtaggcccaggaactgaacc 207

            
Query: 306 c 306
           |
Sbjct: 206 c 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no169_d09.g1 MSMg01no169_d09.g1 CHROMAT_FILE:
MSMg01no169_d09.g1 PHD_FILE: MSMg01no169_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:50 2005
         (339 letters)



>mm_chr10_58816498_58817236
          Length = 739

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/339 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgtcacgagtcacaatctgaggttttagagtccatgattaattagttacaaatggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgtcacgagtcacaatctgaggttttagagtccatgattaattagttacaaatggcca 260

                                                                       
Query: 61  tttttataatatcaatggtaatttgcattttagagccttttcttcatgttatcaatgttc 120
           || ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttcttataatatcaatggtactttgcattttagagccttttcttcacgttatcaatgttc 320

                                                                       
Query: 121 tatcctactgaagaaattaattccaaccttttctgtttgtgtgacctctattcacgcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcctactgaagaaattaattccaaccttttctgtttgtgtgacctctattcacgcagt 380

                                                                       
Query: 181 gaaaagcaagtaaaatagtttttaagaaacataaaactaactggctttcaaggcgcgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaagcaagtaaaatagtttttaagaaacataaaactaactggctttcaaggcgcgaca 440

                                                                       
Query: 241 caaggtgattggaagggtattgagttattttctattcaccctcttttgtttaaagaagaa 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 caaggtgattggaagggtattgagttattttctattcaccttcttttgtttaaagaagaa 500

                                                  
Query: 301 agaaaagaaaacccagcattgtggctggttagggaaatg 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaagaaaacccagcattgtggctggttagggaaatg 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)