BAC Information

Click to search

BAC

Clone NameMSMg01-169L13
Chromosome10 (Build37)
Map Location 82,577,741 - 82,577,905
singlet/doubletsinglet
Overlap geneChst11
Upstream geneAU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185
Downstream geneSlc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169L13.T7 (MSMg01no169_l13.b1)MSMg01-169L13.TJ (MSMg01no169_l13.g1)
ACCAG366506
length856697
length of high quality
(start - end)
---233 (124 - 356)
definitionCHROMAT_FILE: MSMg01no169_l13.b1 PHD_FILE: MSMg01no169_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:29 2005CHROMAT_FILE: MSMg01no169_l13.g1 PHD_FILE: MSMg01no169_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTTCCCTCTTTCTCTTTTCCCCCCGCGGACGTGTGCCATTTAACCCCCC
TTTTNNNTACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATTGTTGCTGCTTGAACGTTCGAGTGAGGTGATAAGATAACAGCTC
GGTCAGAGAGAGATATGTAATGTGGTCGACTAGATACAGTGGCGTAACAC
CCAGTCTATCCGCAACCCCGGTACCTTAATTTACGGCAATGTGCTCCGCC
TGCGCATTCTCCAAGCAGTGTCGCGTCTGTATTGGGAAATTTTTTAATTT
TTGTTCCTATTCCCCCCCCCCGGATTTTATTTTCCCCCCGAGCCCCCTAT
CACTCCAACTTCGTGATTGTTGTTATACTAATAGTACCCTCCGCCCCCCC
GAATTAATCCCGCGCCGGTTCACCACTTATTGGGAGAGGCTAACCATCTC
TTGGCGCTCCTTAATATTTTTCCCGGCGTGCCGCCGGCGTTTTATCTTGT
TCGACG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGAATTTAAAGAAAAAATTCT
CAAAGTGTGACATTTCTGACCCTGGCAAGCTTCAGGGATTGAGAGCAGCA
GGCAGGGGAACCTCAAAACGTGCTGTGCGTCGTCTGCACGTCTCTCTTGG
GCTCCTGCGCACTTTCCCTTTTACAGTTTCTGGGGGGTCAAGAGCTTCTT
TCCCACTTGACCATTTACAGACGTCCTGGTGTTGAGTGTATACACCCCAT
CTTTTCACATAGCTTGGTTCGAATCTGCTTCTTGCCTCTGGGGTTCACAG
TTTGGNCTCATTCCACCACCCACCCGGAGACCCTCATGCTCTTGCTGCCA
CACAAAGTACAGCTCTCCCAAAAGAGAAAGGGATCGCTCATCTCGGGGGC
TGCTTGTGTGGCCTGGATCCATCTGTGTTTCCTTCATCCAGTGAAGGATG
GGAGGGACAGGACTGGGAGTCCGTCAGGCTTGCAGGCTACAGGTAGACGG
CAGCATTCGATGACATCTGCGGGGCCGGGACAGCATGGGGCCAGCAGGAT
GTGAGGGGTGTGAGTGTGTGTGTGTGTTTACTTTTTTTTATTTATAAAGC
ATAGTTTTTTATAAGACTCGAATACCGTTTATCTCAAATAGCAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_l13.g1 MSMg01no169_l13.g1 CHROMAT_FILE:
MSMg01no169_l13.g1 PHD_FILE: MSMg01no169_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:29 2005
         (233 letters)



>mm_chr10_82577475_82578107
          Length = 633

 Score =  252 bits (130), Expect = 2e-71
 Identities = 157/166 (94%), Gaps = 2/166 (1%)
 Strand = Plus / Plus

                                                                       
Query: 67  gtctctcttgggctcctgcgc-actttcccttttacagtttctggggggtcaagagcttc 125
           |||| ||||||||||||| ||  ||||  ||||||||||||| |||||||||||||| ||
Sbjct: 267 gtctgtcttgggctcctgtgctccttt-gcttttacagtttccggggggtcaagagcctc 325

                                                                       
Query: 126 tttcccacttgaccatttacagacgtcctggtgttgagtgtatacaccccatcttttcac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttcccacttgaccatttacagacgtcctggtgttgagtgtatacaccccatcttttcac 385

                                                         
Query: 186 atagcttggttcgaatctgcttcttgcctctggggttcacagtttg 231
           ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 386 atagcttgggtcgaatctgcttcttgcctctggggttcacagtttg 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)