BAC Information

Click to search

BAC

Clone NameMSMg01-171D14
Chromosome10 (Build37)
Map Location 44,837,031 - 44,837,297
singlet/doubletsinglet
Overlap genePrep
Upstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
Downstream genePopdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171D14.T7 (MSMg01no171_d14.b1)MSMg01-171D14.TJ (MSMg01no171_d14.g1)
ACCAG367535AG367536
length702720
length of high quality
(start - end)
271 (53 - 323)282 (78 - 359)
definitionCHROMAT_FILE: MSMg01no171_d14.b1 PHD_FILE: MSMg01no171_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:23 2005CHROMAT_FILE: MSMg01no171_d14.g1 PHD_FILE: MSMg01no171_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGATGGCTGGGAAACAATGACAGCGTCCTTCTACAAAA
ATCACCACTCCAACCTAAGCTATGCGTAAAATCACCAGAGTACCGACACA
AAGACGTAGGCTTCCACAGTATCCTTCAGACACACCAAGATGTGTCAATA
CTATAGAGTAGGGCCCAGTGTGGCACCTCGGCAGTGCTCCTTGCTGTATC
CACCTCATGGGGACAGTTCTGCCTCAGTGGCTCTCAAAGAGACTCTGAAA
GGGTCTTGGCCTGAGGATGTTCAATATATGAAATGCCCCAGGACCTGCTC
TATGACTTAGGATTTAGTGATCACAGNTCTGAGGCCCAGAGGACTGGTTT
TGTAAGTCTTCCCACTGTGAACACCAAAATGAAAACGCTTTTACCCACTG
AAGCCTGGGGTAGACAAAGCGCCACTCTGACCACAGCTGGAGACATGTCT
GCACTGCATGAGGCAGGGATCTGGTAGGCAGGGCCAGCTGTATATTTAGT
GCATAAGCCTGTGCTTAGCTTGGCCCTGGAGTTGTGTTTTTTGCTGCTAT
GATTATGCGTTGTTGTCTTGAAGCCTATCCGATACTGCTATGCATGCTGA
ATGTACTTCACTACCTTTCCGAAACTTTTCTACCTACTTCCTCACTGTTC
TG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGAACCTGAAAAAATTTTCCCCATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
TTCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
GGAAATCAGTCTGGCGGTTTCTCAGGCAATTGGACATAGTACTACCGGAG
GATCCATTAGATCGCTCCTGGGGCATATCCAGAAGATGTCCCAACCGGTA
AGAAGGACACATGCTCTACAAAAAAAATAAAAACCTTATTTATAATAGCC
AGAAGCTGGAAAGAACTCAGATGCCCCTCAACAGAGGAAATGATACAGAA
AATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTGGGCAAGTGGTTGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACAATCACAAGAGAACTCAAATGATATGTACTTCACTGA
TTAGCGGATATTAGCCCAGAAACTTAGGATATCCAAGATATAAGATACAA
TTTGCTAATTGTATGAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_d14.b1 MSMg01no171_d14.b1 CHROMAT_FILE:
MSMg01no171_d14.b1 PHD_FILE: MSMg01no171_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:23 2005
         (271 letters)



>mm_chr10_44836827_44837497
          Length = 671

 Score =  493 bits (255), Expect = e-144
 Identities = 264/267 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatggctgggaaacaatgacagcgtccttctacaaaaatcaccactccaacct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattcagatggctgggaaacaatgacagcgtccttctacaaaaatcaccactccaacct 412

                                                                       
Query: 65  aagctatgcgtaaaatcaccagagtaccgacacaaagacgtaggcttccacagtatcctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aagctatgcgtaaaatcaccagagtaccgacacaaagacgtaggcttccacagtatcctt 352

                                                                       
Query: 125 cagacacaccaagatgtgtcaatactatagagtagggcccagtgtggcacctcggcagtg 184
           ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cagacacaccaagacatgtcagtactatagagtagggcccagtgtggcacctcggcagtg 292

                                                                       
Query: 185 ctccttgctgtatccacctcatggggacagttctgcctcagtggctctcaaagagactct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctccttgctgtatccacctcatggggacagttctgcctcagtggctctcaaagagactct 232

                                      
Query: 245 gaaagggtcttggcctgaggatgttca 271
           |||||||||||||||||||||||||||
Sbjct: 231 gaaagggtcttggcctgaggatgttca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)