BAC Information

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BAC

Clone NameMSMg01-173L10
Chromosome10 (Build37)
Map Location 106,783,140 - 106,860,825
singlet/doubletdoublet
Overlap geneLin7a
Upstream genePpfia2, Olfr1556-ps1, 8430416H19Rik
Downstream geneMyf5, Myf6, Ptprq, EG628870, Ppp1r12a, Pawr, EG667814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173L10.T7 (MSMg01no173_l10.b1)MSMg01-173L10.TJ (MSMg01no173_l10.g1)
ACCAG369238AG369239
length722728
length of high quality
(start - end)
313 (46 - 358)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no173_l10.b1 PHD_FILE: MSMg01no173_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:26 2005CHROMAT_FILE: MSMg01no173_l10.g1 PHD_FILE: MSMg01no173_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,860,520 - 106,860,825)(106,783,140 - 106,783,421)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATCATTGCTTCTGACTTAAAGGTCCTTGAACCTTTGAGATGT
TTAATTTGATTCCAGGATGTATCTTGGAAGAAATTCTGGCTTTGGCTATG
GCATGCAAAATTATAATGCCCATTAATATATGTTAGTCAGAAGTCAAAAA
TAATTAATTTAGCCTCCTCTTCAATAATTCACCCATTCAACAAATCCTCA
TTGAGTGCCCAGAGTGCACCAGCACATTTGCAGGACCACAGTCACATGAC
TTGGTCTGATGGAGTCTGGGGTCTGAGGAAGGATAGGATGCTATGGAAAG
TCTTATTTTTTGGGGCCCCCCCCCTCCCCAGAGAATGTTCGGTATCTGTG
TCTCCATCTTGTTTGAAGCTTAAGTCTGGGTTAGAAGTGCTTACAAGCAA
AACCCAGCTGAAAGGTGAGAAACCTGGGGACTTATTCACACACCCACAAA
TAGTACTAGATGTTGAAAGAGGTGTGCCATCTTTGGAGTCCTGAATGTAC
AGCCCTGTAAAAGGAAACAAGATTGGCTTGATGTCACGTTTGAGAACCGC
ATTTGTAAATGGGTGTGATTTGTCTCTAGCCAAGTTCTTTAGAGAAAAAC
TTCCTTCTTAACAAGGCCCTGAATGCTAGAATTTTCTTCTTTTACTCAGA
TCTCACCATTGTTTTGAAAGAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCCTTACTTATGAGAAAGGA
CTTATTCCTGGTACAAGATAGTGCTTAACCAACAACCATAACTCACCAAG
AGAACTTGAATGCTGGAGATTAAGAAATGAACTTACTTAAACAAGCTAGA
AAATCTTTCCTACCTACAATATAATAAAGATATTCAAATTATTTACCAGT
TCAAATGCCAAGAAAAAGCAAGACTGGAAGAAATCCAAAAGATGTAGAAA
ATTATGGACAGTTGAACTTGTCGATAATAAATATTTAAAATATTTTAGGA
TAGTCCAAGGAGTAGACTACAACTTATCAATTATTGTGGTTGAAATATTG
TAATTATGAGTGCAATTTAAATCACTATGCTGACATTTCAGACAAAATAC
CTTGTCAAGCAAAGGCAATTATTTAAACAGTAGTGAAGAGGAAGAGAGCT
ATTTACATCGTTCATTTACCTTAATTAATTTGGGTATATTATGACAGGCA
AGAAAAGTATTTTTCAAGATCTTTATGGCACTACGACTTCAAGTAATACA
ATAACTGAATCATACTTAGAATTTAAATTTAATGCAAATAAAGATAAACT
TTGATAATAAAGAATCTCCTTAATATATCAACTTAATCACAATGGCATAA
TAATAAAAACATGATTTATTTGAGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_l10.b1 MSMg01no173_l10.b1 CHROMAT_FILE:
MSMg01no173_l10.b1 PHD_FILE: MSMg01no173_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:26 2005
         (313 letters)



>mm_chr10_106860445_106861157
          Length = 713

 Score =  592 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaatcattgcttctgacttaaaggtccttgaacctttgagatgtttaatttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattctcaatcattgcttctgacttaaaggtccttgaacctttgagatgtttaatttga 322

                                                                       
Query: 65  ttccaggatgtatcttggaagaaattctggctttggctatggcatgcaaaattataatgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccaggatgtatcttggaagaaattctggctttggctatggcatgcaaaattataatgc 262

                                                                       
Query: 125 ccattaatatatgttagtcagaagtcaaaaataattaatttagcctcctcttcaataatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattaatatatgttagtcagaagtcaaaaataattaatttagcctcctcttcaataatt 202

                                                                       
Query: 185 cacccattcaacaaatcctcattgagtgcccagagtgcaccagcacatttgcaggaccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccattcaacaaatcctcattgagtgcccagagtgcaccagcacatttgcaggaccac 142

                                                                       
Query: 245 agtcacatgacttggtctgatggagtctggggtctgaggaaggataggatgctatggaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agtcacatgacttggtctgatggagtctggggtctgaggaaggataggatgctatggaaa 82

                 
Query: 305 gtctta 310
           ||||||
Sbjct: 81  gtctta 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no173_l10.g1 MSMg01no173_l10.g1 CHROMAT_FILE:
MSMg01no173_l10.g1 PHD_FILE: MSMg01no173_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:26 2005
         (282 letters)



>mm_chr10_106782940_106783621
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcccttacttatgagaaaggacttattcctggtacaagatagtgcttaaccaacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcccttacttatgagaaaggacttattcctggtacaagatagtgcttaaccaacaac 260

                                                                       
Query: 61  cataactcaccaagagaacttgaatgctggagattaagaaatgaacttacttaaacaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataactcaccaagagaacttgaatgctggagattaagaaatgaacttacttaaacaagc 320

                                                                       
Query: 121 tagaaaatctttcctacctacaatataataaagatattcaaattatttaccagttcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaaaatctttcctacctacaatataataaagatattcaaattatttaccagttcaaat 380

                                                                       
Query: 181 gccaagaaaaagcaagactggaagaaatccaaaagatgtagaaaattatggacagttgaa 240
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcgagaaaaagcaagactggaagaaatccaaaagatgtagaaaattatggacagttgaa 440

                                                     
Query: 241 cttgtcgataataaatatttaaaatattttaggatagtccaa 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtcgataataaatatttaaaatattttaggatagtccaa 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)