BAC Information

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BAC

Clone NameMSMg01-174K09
Chromosome10 (Build37)
Map Location 49,355,056 - 49,486,947
singlet/doubletdoublet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream geneLOC629652, Ascc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174K09.T7 (MSMg01no174_k09.b1)MSMg01-174K09.TJ (MSMg01no174_k09.g1)
ACCAG369884AG369885
length727731
length of high quality
(start - end)
315 (46 - 360)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no174_k09.b1 PHD_FILE: MSMg01no174_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:34 2005CHROMAT_FILE: MSMg01no174_k09.g1 PHD_FILE: MSMg01no174_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,355,056 - 49,355,365)(49,486,659 - 49,486,947)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGACATCAAAGAACAAACTAACAAACAAGCCTTAAGAGGAAAAA
TGTTAACTTTGACTCAAGGGTTTAGAGGATTAGGCCCATTATAGTTTGAT
ATTAGCAGCCAAAGCAGGATGTTGTGATAATGGGTGTGCAGTAGAGAGAT
GGTTCTTCACCAGACAGAAAACAGAGAAAGGGCATAGAGCAAAGGGCCAG
GGCATGATCCAGTGCAAGGTCATGACCCCAGTGATACACATTCACAAAGT
ACATAGTACCATCTACAATTCAACATGTCCCAATAACACCATCATATTTT
GAATCCATCTTTGAATTTACCTCGCGCTTAGATCATAACACATCGAAGCT
ATTCACTTCCCAAAGCACATCAGCTGGCAGTCAACAAGAAGCAGATAGCT
TAGATTGGATATTGCATACTCGAAACAAACCAGTTCTTTGGCAGTGAGTT
TTTGAGCCCATAGTGAATCAGAACAGCAGCATTTGTACTAAGAGTAAAAG
GAGGGAAAGTGGCTCACATCATGGTGGACAGTAAGCACAGAGGAAAGAAG
AGTCTTTGTGTTAAGCATCATCTTCATGGTCACACCCCTAGTCACCTACT
CTCTCTAGCTCAATGTCACCTCTTAATGTTTACATGAAAATTCTGCAAAA
GCACCACCAGATAAGCATTCAACACAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGATCAACATCAATTAAGTGGG
AAAACCCATTTTCAAATGTATTTGCCAAATAATATTTATGAACCCAAAAG
GAATTGGTCTCTTTAACTCATGCTAAATTCCATTTCCCTTCCTTTAGTTG
ACAATTCCAGCAACAGAGTCAGAATGATGTGATAAGGAGATTTAAAAACT
TTTCCAGAATTTATTAAGTATGATTTAAAAGAAAACATTTGCATGCCCAT
ATGACTTACCTAGAGTTTACGAACAGAGGTAAATGTTAGATAGCTGTATC
CAGGGCAGGAAAGATGAATATCTTTACGCACCTCACACTGATTCTCTTTG
ACTTACATTTTCTTATTCATTCTGGTGGACAAATACCATTGCCTTGACTT
TTTCATCTTTCTTTTTTAAATATATTTTTTTAGATATTTTCCTCATTTAC
ATCTCAAATGCTATCCCCTTTCCTAGTTTCCTTTCTGAAAATCCCCTATC
AGCCCCCCCCCCCCCCCCCCCGCTTCATAACCCACCCACTCCTGCTTCTT
GGCCCTGGTATTCTCCTATACTGGTGCATACAATCTTTCTAAGACCAAGT
CCCTCTCCTCCCTTTAATGGACGAATAGAACTTCCTCTGCTACATATGCA
CCTGGAGACCCGCAGTCCATCATGAGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_k09.b1 MSMg01no174_k09.b1 CHROMAT_FILE:
MSMg01no174_k09.b1 PHD_FILE: MSMg01no174_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:34 2005
         (315 letters)



>mm_chr10_49354852_49355566
          Length = 715

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgacatcaaagaacaaactaacaaacaagccttaagaggaaaaatgttaactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgacatcaaagaacaaactaacaaacaagccttaagaggaaaaatgttaactt 264

                                                                       
Query: 65  tgactcaagggtttagaggattaggcccattatagtttgatattagcagccaaagcagga 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 tgactcaagggtttagaggattaggcccatgatagtttgatattagcagccaaagcagga 324

                                                                       
Query: 125 tgttgtgataatgggtgtgcagtagagagatggttcttcaccagacagaaaacagagaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttgtgataatgggtgtgcagtagagagatggttcttcaccagacagaaaacagagaaa 384

                                                                       
Query: 185 gggcatagagcaaagggccagggcatgatccagtgcaaggtcatgaccccagtgatacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggcatagagcaaagggccagggcatgatccagtgcaaggtcatgaccccagtgatacac 444

                                                                       
Query: 245 attcacaaagtacatagtaccatctacaattcaacatgtcccaataacaccatcatattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attcacaaagtacatagtaccatctacaattcaacatgtcccaataacaccatcatattt 504

                     
Query: 305 tgaatccatc 314
           ||||||||||
Sbjct: 505 tgaatccatc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no174_k09.g1 MSMg01no174_k09.g1 CHROMAT_FILE:
MSMg01no174_k09.g1 PHD_FILE: MSMg01no174_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:34 2005
         (289 letters)



>mm_chr10_49486459_49487147
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgatcaacatcaattaagtgggaaaacccattttcaaatgtatttgccaaataatatt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 489 tatgatcaacatcaattaagtgggaaaacccattttcaaatatatttgcaaaataatatt 430

                                                                       
Query: 61  tatgaacccaaaaggaattggtctctttaactcatgctaaattccatttcccttccttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tatgaacccaaaaggaattggtctctttaactcatgctaaattccatttcccttccttta 370

                                                                       
Query: 121 gttgacaattccagcaacagagtcagaatgatgtgataaggagatttaaaaacttttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gttgacaattccagcaacagagtcagaatgatgtgataaggagatttaaaaacttttcca 310

                                                                       
Query: 181 gaatttattaagtatgatttaaaagaaaacatttgcatgcccatatgacttacctagagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaatttattaagtatgatttaaaagaaaacatttgcatgcccatatgacttacctagagt 250

                                                            
Query: 241 ttacgaacagaggtaaatgttagatagctgtatccagggcaggaaagat 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttacgaacagaggtaaatgttagatagctgtatccagggcaggaaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)