BAC Information

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BAC

Clone NameMSMg01-175J01
Chromosome10 (Build37)
Map Location 102,863,846 - 102,864,188
singlet/doubletsinglet
Overlap geneSlc6a15
Upstream geneLOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik
Downstream geneEG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175J01.T7 (MSMg01no175_j01.b1)MSMg01-175J01.TJ (MSMg01no175_j01.g1)
ACCAG370513AG370514
length770716
length of high quality
(start - end)
343 (74 - 416)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no175_j01.b1 PHD_FILE: MSMg01no175_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:40 2005CHROMAT_FILE: MSMg01no175_j01.g1 PHD_FILE: MSMg01no175_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAGATCCGCGG
AATTCTTTGTCAGTTGCTTTGATAGGAGGTAAAAGAAGCTGTGTTCTTTG
CATGTCTGGCTCTGAGTTTGTATCCCTTTTGTAGGAGCAAAAATGCTGAT
GTGGGCGTCTGGTTTTCTTCTGTAGTTCAAAAGTGCTCTTTAATATTTGG
AGCCCTTGAGAACTTCCAGTGAACACCGCTTTAAATTCATAAATTTCAGC
CACCTTAGAATTATTAAAATCCGCTTCAAGCCTTACATACTTAATAACCC
AAACTATTTATATTCAGAGCATTGAAGAAAATGTTTCCTGGGTTCAGTGC
AACTCATTCTTCTGAGTAAACTTCTGAAAACTACTTTCTAAGCCCACAGC
TGGTTATCACAGTTCCGCAGCTTGGTTTTAGTATGCACTTTAGAACTGAT
ATAACCTTTAAATGGATCTAGCACTTAAAATTTCAGTATAAATCAACATT
TTTAGTTTGGGCTAAAGATTGGTGCTAAAATTCTAGCTTCTCCTCTCCCC
TCCCCTCCTTTTTACTCTACCATCCTCCACATTCTCATTATTTTTATTCT
TCTCCCCCCATCCCTTTTCTTTTTTATCTCCCCCCCCCCCCTTTTTTTAT
TTTTTCTCTCCTCATTATACCCCCACCCCCCTCTTTTTTTTATCCCCCCC
TCTCCTCCCTTTTTTTCTCTTTCTTCAGCCCTCCTCACTTCTACTCCCTC
CTTCTCTTATATATTACTCT
TCATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACTTCAGTTCTTGCTACCAGGTTC
CTGCCTGTAGTTCCTACACTGATAAACTACAATGGTAAAGTAAAATAAAC
TCTTTCTTCCCCACATTGCTTTGGGTCATGTTGTTTTAATCACTGCTGTA
CAAAGTCCAACTAACATATCCAGAGATGAACTACTTGTTATGCACACCAA
AATTGTGAACCCTTAAAATAGCATATACACAAGTCACACTAAACATAACC
AGAATGTTGTATTTATATATTTATCTATGTATACAGAACAGTAATGACCA
AAATACAGGCGGTTTATTTTAATATCCCACCCGCTCAATTGGTTATGTAA
ATTTGTCTTTAGCAATAGAACCTTGCCTTCAAAATGAGAAGAACCACCTA
TAATCTTAGAAATTTCCTAGTATTTTGAGACTTCTCAAGGAAACACTTTA
GTCAAGAACTCAGATGTAAACCATTGCCAGTAATGGAAATTTTATTTGAT
GGTGGGAGATTTTCATTTAGTGCTTTATCTCCCCTGTTATTTGGCAACGT
CATTTACGTGCCCTTCGTACATATATCTGTATATACATTACATATATTTA
TTTTAGGAAGCATGTACTATATTAGGTTCTCATACAATTCCTCAGATGGC
CTTTAATTTTAGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_j01.b1 MSMg01no175_j01.b1 CHROMAT_FILE:
MSMg01no175_j01.b1 PHD_FILE: MSMg01no175_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:40 2005
         (343 letters)



>mm_chr10_102863646_102864388
          Length = 743

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaggtaaaagaagctgtgttctttgcatgtctggctctgagtttgtatcccttttgta 60
           |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||
Sbjct: 201 aggaggtaaaagaagctgtgttctttgcatttctggctctgagtttgtattcattttgta 260

                                                                       
Query: 61  ggagcaaaaatgctgatgtgggcgtctggttttcttctgtagttcaaaagtgctctttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagcaaaaatgctgatgtgggcgtctggttttcttctgtagttcaaaagtgctctttaa 320

                                                                       
Query: 121 tatttggagcccttgagaacttccagtgaacaccgctttaaattcataaatttcagccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttggagcccttgagaacttccagtgaacaccgctttaaattcataaatttcagccac 380

                                                                       
Query: 181 cttagaattattaaaatccgcttcaagccttacatacttaataacccaaactatttatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagaattattaaaatccgcttcaagccttacatacttaataacccaaactatttatat 440

                                                                       
Query: 241 tcagagcattgaagaaaatgtttcctgggttcagtgcaactcattcttctgagtaaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagagcattgaagaaaatgtttcctgggttcagtgcaactcattcttctgagtaaactt 500

                                                      
Query: 301 ctgaaaactactttctaagcccacagctggttatcacagttcc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaaaactactttctaagcccacagctggttatcacagttcc 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)