BAC Information

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BAC

Clone NameMSMg01-175L22
Chromosome10 (Build37)
Map Location 115,145,016 - 115,145,286
singlet/doubletsinglet
Overlap genenone
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071
Downstream geneEG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175L22.T7 (MSMg01no175_l22.b1)MSMg01-175L22.TJ (MSMg01no175_l22.g1)
ACCAG370645AG370646
length711732
length of high quality
(start - end)
274 (93 - 366)281 (88 - 368)
definitionCHROMAT_FILE: MSMg01no175_l22.b1 PHD_FILE: MSMg01no175_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:53 2005CHROMAT_FILE: MSMg01no175_l22.g1 PHD_FILE: MSMg01no175_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTACAGGTCACAAATCTAAAGTCAATGTGTTGTGTAATCCGA
CAACATGTCATCAAAAGGCTCAGAAGAGTCCATTTTTACACCACGCTGCC
AAGGGGGAAACAAGAAAGGCTCGGAGCATCTGGAAAATAGAAAAATCCTC
TTGAAACACTCTGGCCAATTAACACATTAATTTTATGTGAGTATCGTCTT
TCTACCGTCTAATTTTCCTAGTGCCGTGCTCTTTATTTAGTGACCTCTAA
GAATATTTGTTGAAAATACCATTTGTTATTCATGAAACCTCTTTCTCTTC
TGTAGGACTCTGGTTTGTTTCAAGACGCACAACACAGACTAGCACCCAAA
CTCAGGATACCACCCTCAATCCCCAGAAATAATCTCAAGGTGCCACTACA
CAGGAACCTTCTCTCATGGATATGCTGACAACTGTAGTATATATATATAT
ATATATATATATATATATATATATATATATATATATATGCGTGTGCCCAA
GGAACACGTCTGATTAAATGATATAAAGAACCATGCAAAGCCCAGGGGAT
TTGCTCTGAACTCAATGTCACAATTCCCAAGAAGAGATACCGGGAAGTAC
TGAGTATTGGGACTGACCGAGATGACTTAGGATCCCTTTTCAGCCTAGCA
TACTTGCTGTN
GGGTAANCCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATATTGTGATT
CTTCCAGAATATTCCTATTGTTCGAGATTATTTTAACTATCTGAGGTCTT
TTGTGCTTTCATGTGAACTTAATAATGTTTTTAGTTCTGTGAATGACTGA
GTAGGTTCTTTGATTACATGGAATCTATAGATTGCCTTTTGTAGGATGGC
CATTTGTGCAATAGTCATCCTACCAATCCATGAGCATAAGAGGTCTTTCT
GGCTCTTAGTGACTTCTTCAATCTCTTTCTTCAGTGTCTTTATTGTAGAG
TTCTTTCAATTCCCTGGTTTGTTTATTTTTATCTATCAGGATTTCTAATA
AATATCCTATTTATATTTTTTTGTTTCGAGGCTATTGAAAATGGATTTGT
TTCTGAGTTATTTTTGAGTAGTTTGCCATTGGTGTGTAGGAAGGCAGCTG
ATTTTCATATGTTGGCTTTATATCCCCTGCTTTGCCCAAAGTGTCTATAG
GCGTTTTCTGATGGAGCCTTTAGGTTCTCTAGTGTATCTACCAGTAGGGA
TGCTTTTGATGTCTTCATTTCCAATTTGCCCTTTTATTTCCTTCTCTTGA
CTTAATGTTCTAGCTAGGATCTCCACCACTGTATTGAACGGCAGTTGGGA
GAGTAGGCACCGTTGTCTTCGCCCTGATCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_l22.b1 MSMg01no175_l22.b1 CHROMAT_FILE:
MSMg01no175_l22.b1 PHD_FILE: MSMg01no175_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:53 2005
         (274 letters)



>mm_chr10_115144816_115145489
          Length = 674

 Score =  478 bits (247), Expect = e-139
 Identities = 265/271 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatccgacaacatgtcatcaaaaggctcagaagagtccatttttacaccacgctgccaa 60
           |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 471 taatccaacaacatgtcatcaaaaggctcaaaagagtccatttttacaccacactgccaa 412

                                                                       
Query: 61  gggggaaacaagaaaggctcggagcatctggaaaatagaaaaatcctcttgaaacactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gggggaaacaagaaaggctcggagcatctggaaaatagaaaaatcctcttgaaacactct 352

                                                                       
Query: 121 ggccaattaacacattaattttatgtgagtatcgtctttctaccgtctaattttcctagt 180
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 351 ggccaattagcacattaattttatgtgagtatcatctttctaccgtctaattttcctagt 292

                                                                       
Query: 181 gccgtgctctttatttagtgacctctaagaatatttgttgaaaataccatttgttattca 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 291 gccgtgctctttatttagtgacctctaaggatatttgttgaaaataccatttgttattca 232

                                          
Query: 241 tgaaacctctttctcttctgtaggactctgg 271
           |||||||||||||||||||||||||||||||
Sbjct: 231 tgaaacctctttctcttctgtaggactctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)