BAC Information

Click to search

BAC

Clone NameMSMg01-178I04
Chromosome10 (Build37)
Map Location 13,778,962 - 13,779,198
singlet/doubletsinglet
Overlap geneHivep2
Upstream genePlagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178I04.T7 (MSMg01no178_i04.b1)MSMg01-178I04.TJ (MSMg01no178_i04.g1)
ACCAG372574AG372575
length719722
length of high quality
(start - end)
237 (46 - 282)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no178_i04.b1 PHD_FILE: MSMg01no178_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:19 2005CHROMAT_FILE: MSMg01no178_i04.g1 PHD_FILE: MSMg01no178_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTTCGAGAGGATCCGCGGAATTCACTCTTATCCCGGGAAGG
CAAACCTCAGCTCTGCCTAATAGTTTCAGGTCTGAGAGTTACAAGCCTAT
GCTGAGGACTGGATAGCTTGCCTAAGGCCTGTGCAAGTAACCTCTACTGG
CAACAGTAACAGTGTTAGGAATGTAGCTGTAAGCCTGGGAGCAAAACCTA
TCCATTCCTTTTCTAAACAGGGATACCAGTGTATACACAATGTCTCTGGT
CAACATTTGTCTTTAATGGCAACAAATTTAACATCATTAGGCAACTATTT
TTTAACTGTGACGTAATCAATACTTTTCTGTTAGTGTCTGAATATTACTT
TGGTTGCAAAAATAACTGTCTACTTCTCCTGTGTAGTACTTTCCCACGCC
ACAGTACTCACACAACACCCTCAACGACAGCACTCTTCTTCCTTTTCCTC
CGACTCTGGGTGACATTAGGAAGTGTCATACCTCAGATACAGAATGATAC
CATTATTGACACTATACTTTTGTGTCTTCTTTGAACCCGCCTCTGGATAT
TTCCTCCCCGCTACCCCACTTTCACCTTTTTTTATTTTGCCTATAACGTA
TCATATTCCCCATATTTATTCACGCCACTTGCCCTCATAGTTTATTCCTA
TTCCCTATCCCTTGACCCGGCCGCATTATATATGTCTTCTATTTAGGTAT
AACACCGCCTCACCCCTTN
ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTGGCCTAGTAAGGATATCT
AGAAAGCATATTTCCAGTTTCTTTAGAAATTAAACGTTATAAACTACATG
GTCCAACTATTGCTACCTGCATAATTACCTAATGAAAAATAAATTAATAT
GTACACAAATATTCATAGCAGCTTCATTTTTAGTAATCAGAAACTTCAGA
CAAGTTAAACATGTCCATCCATAGGTGAATGGATTTTAAAAACAAACAAT
CAGCCGCAAGAGTGAAGAACAACATGAAGTAACTTGTCTGCATGGAATTG
CTTTCCAGCTTTTTTTCTACCCCCTCCCCCCCATGCATAGTGACCTGATG
ACAAAGTGGATTCACCTCCCCATGCTACATAATCGACACCTCGAGTTGTC
AATTTTTTAAATATAGAACGCCACCCGGTTAACATTTTGCACTCTGTGAG
TCTGATGACCTTAATTGTAAACCACTCTTTTGTGCAATTAGACCACCATA
TCAGCCATATAACCCCAACACTTCATTGCACCGTTTCTATACACCTTTTA
AATCATTACCCTTTTATTATATCACACACCCCCTACTGTTTTGTTCTTTT
GACTTCAATAACCCTTCAACCTTTTTTACATAAACCTAATCTTCTCCTTT
TTTTTACCACTCTATATTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_i04.b1 MSMg01no178_i04.b1 CHROMAT_FILE:
MSMg01no178_i04.b1 PHD_FILE: MSMg01no178_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:19 2005
         (237 letters)



>mm_chr10_13778762_13779398
          Length = 637

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaggcaaacctcagctctgcctaatagtttcaggtctgagagttacaagcctatgctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaaggcaaacctcagctctgcctaatagtttcaggtctgagagttacaagcctatgctga 378

                                                                       
Query: 61  ggactggatagcttgcctaaggcctgtgcaagtaacctctactggcaacagtaacagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggactggatagcttgcctaaggcctgtgcaagtaacctctactggcaacagtaacagtgt 318

                                                                       
Query: 121 taggaatgtagctgtaagcctgggagcaaaacctatccattccttttctaaacagggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taggaatgtagctgtaagcctgggagcaaaacctatccattccttttctaaacagggata 258

                                                                    
Query: 181 ccagtgtatacacaatgtctctggtcaacatttgtctttaatggcaacaaatttaac 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccagtgtatacacaatgtctctggtcaacatttgtctttaatggcaacaaatttaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)