BAC Information

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BAC

Clone NameMSMg01-179C03
Chromosome10 (Build37)
Map Location 54,084,795 - 54,085,155
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
Downstream geneLOC100041898, LOC382460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179C03.T7 (MSMg01no179_c03.b1)MSMg01-179C03.TJ (MSMg01no179_c03.g1)
ACCAG373010AG373011
length725730
length of high quality
(start - end)
364 (46 - 409)433 (77 - 509)
definitionCHROMAT_FILE: MSMg01no179_c03.b1 PHD_FILE: MSMg01no179_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:04 2005CHROMAT_FILE: MSMg01no179_c03.g1 PHD_FILE: MSMg01no179_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGCCCCACTGCCAACCTCTCCCACAAATCATTTTGATAGCCAAA
GGCCTTTTCCTAATTATCACACCATAAACTGAATCATTGAGCTGCATTCT
CTCTTGAAAAGCTTTCTTGTGCCTCAGCAGTCCTTGTTGCATGTGGTAGC
CAGATAAGGTCAGTACAAAACTCTTAAAATCCTCTTTTTTAGTAGTAGTA
GTAGTGGTAGTAGTAGACTCCCTCAGTTGTTATCGAAATTCTACTCTCTC
ATCTTTCAAATTCTCTTTGGAATGAATAGCTCATATTCATTCAGTCAAAT
TGTTCAATCCACTGTCATCTTACCATGTAATCTCCAAGTTTCTGTTCAAG
ATGGATAGAAGTGTTGTCCCCTTAAAAGGACCCATATTATTGTATGGCTA
CTCAGATTTAATATTTAAATTCTTACCTATTATTTGAAAAACCTCATAAC
ATTAGGGTTTTACTAACAACTACGCGCGTTCCTTCAAAATGAAGTGTATA
ATTAATTCTTGTATTGTCTTGACATTGAAACCCCTCCCTTTTGATGTTTT
TTCATTTCCTGTTGCCCCATACCCCCTTCCCCTATTTCCGTTTGTTTTCT
ACCGTTATCCCCGTTTTCCTATTCCTAATTTTTGTTCATTTTTCCAATTT
CCCCCTTTTACCTCTTTTTTCCAAC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCCTAAATGATACACTTATAA
TCTTTCAACTGAGGGTGAGGGATAATTGCAAAAGAGGAGTAGAAAGATAT
TAAAAGCTAGACAAACAGGGAATTTTGCTGTTAGATTGCATCTCAGAAGG
TGTATTCATGATGTCTCAGAAGCATGTTTGCCTAAACATGACCTAAATAA
GAATGGTATGATAACATAGATGGGAGAAGGTTCAGGAGACCTCTATCAAA
CAACTATACATAGCTGAGAAGTGCTGAGAGTGGTATAAACAGCTTTCCCC
AGAGAAGAGAATATCAACTGGTCATCCCATAACAACTGGTTATCCCAGGT
AACATTATGTTTTCTTTATGAACGAACAAATATATGCATATGTATACACA
CACACATATATACATATACATAAAGAAGAAATGATTTGGAAAGAGAGCAA
GGAAGTTAGATAAGAAGGTTTGGAAGCAGGAAAGGGGCAGGTAATGTGAT
GTAACTACATTATAATCTTAAAAATTACAATATTATGTAAAAAGGATATA
GCAACCTTGCTGCAGATTCTTACAATGTATTACAAATAGACACATTTATA
GAGAAATAAAACGGACTAGAGATTTCTCGTACAATGCCTCTGTCCTGAGA
GGCAGTAAAAATATTCTATAACTGAAGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_c03.b1 MSMg01no179_c03.b1 CHROMAT_FILE:
MSMg01no179_c03.b1 PHD_FILE: MSMg01no179_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:04 2005
         (364 letters)



>mm_chr10_54084592_54085355
          Length = 764

 Score =  698 bits (361), Expect = 0.0
 Identities = 361/361 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagccccactgccaacctctcccacaaatcattttgatagccaaaggcctttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaattccagccccactgccaacctctcccacaaatcattttgatagccaaaggcctttt 505

                                                                       
Query: 64  cctaattatcacaccataaactgaatcattgagctgcattctctcttgaaaagctttctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctaattatcacaccataaactgaatcattgagctgcattctctcttgaaaagctttctt 445

                                                                       
Query: 124 gtgcctcagcagtccttgttgcatgtggtagccagataaggtcagtacaaaactcttaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgcctcagcagtccttgttgcatgtggtagccagataaggtcagtacaaaactcttaaa 385

                                                                       
Query: 184 atcctcttttttagtagtagtagtagtggtagtagtagactccctcagttgttatcgaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcctcttttttagtagtagtagtagtggtagtagtagactccctcagttgttatcgaaa 325

                                                                       
Query: 244 ttctactctctcatctttcaaattctctttggaatgaatagctcatattcattcagtcaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctactctctcatctttcaaattctctttggaatgaatagctcatattcattcagtcaa 265

                                                                       
Query: 304 attgttcaatccactgtcatcttaccatgtaatctccaagtttctgttcaagatggatag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attgttcaatccactgtcatcttaccatgtaatctccaagtttctgttcaagatggatag 205

            
Query: 364 a 364
           |
Sbjct: 204 a 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)