BAC Information

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BAC

Clone NameMSMg01-180H19
Chromosome10 (Build37)
Map Location 123,849,277 - 123,849,588
singlet/doubletsinglet
Overlap genenone
Upstream geneAI851790
Downstream gene4930503E24Rik, LOC671416, Slc16a7, LOC100042987, EG668313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180H19.T7 (MSMg01no180_h19.b1)MSMg01-180H19.TJ (MSMg01no180_h19.g1)
ACCAG373952AG373953
length741749
length of high quality
(start - end)
320 (34 - 353)469 (114 - 582)
definitionCHROMAT_FILE: MSMg01no180_h19.b1 PHD_FILE: MSMg01no180_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:44 2005CHROMAT_FILE: MSMg01no180_h19.g1 PHD_FILE: MSMg01no180_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAAGG
AGCATCTGAAATAATAACATTATAGAGAAAGTCTAGCTGAATCCAGGATT
ATTTTCTTCTGACCAAACAGAAGGTGATTGTCACTTGGGATAAGGAAAAT
GGATTTTTAACCCAGAATTGCTCCTTTCTAAAGAAAATACGGAGACAAAG
TGTGGAGCAGGGACTGAAGGGAAGGGCATCTAGTGATGGCCCCACCTGGG
GACCCATCTCATATACAGACACCAAACCCAGACACTATTGTTGATGCTAA
GAAGTGCTTGCTGACAGGAGGCTAATATAGCTGCCTCCTGAGAGGCTCTG
TCTGAGCCTGACCACATACCGAGGCTGATGCTCACAGCCAACCACTGGAC
TGAGCATGGGGTTCCCAATGGAGGAGTTAGAGAAAGGACTGAAGGAGCTG
AAGGGGTTTGCAACTCCATAAGAAGAACAACAATATCAACCAACCAGAGC
TTCCAGGGACTAAACCACCAAACAATGAGTATACATGGAGCAACCCATGG
TCCCATATGTAGNAGAAGNTAGCCGTGGTTAGTATCGTTAGGAGGAGAGG
TCCTTGGTCCTGCGAAGGTTCAATGACCCAGCGCAGAGGAATGTCTGGCT
GTAAGGATACAGTGACCATTTGCTCGTCGTTCCCCCCCCCCCCCCTCTCC
TTTTCTTTCCCCCCCCCCCCTCTTTTTCTCCCCTCCCCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCATCTAAAAGAACTGTGAAGACAAAAAGAAAAAAAA
ATAAATTAGAACCTGAGGGAAAGGAGATCAATTGACAGGCCCAAATTGAG
ATCCAGCTCAAGGGGAAGTTCTAAGGCCTGGCACTATCACTGATGCTATG
GTGAGCTTACAGGCAGGAGCCTAGCATGGCTGCTCTCTGAGAGGCCCAAC
AAGCAGCTGAAAGGGTCAGATGCAGATATTTACACCCAACCAGTGGACTG
AAGTCAGGACTTCTGTGGTTGAATTAGGGAAAGGCTGGAAGAAGCTGAGG
AGGAGGGTGACTCCCATAAAAAGACCATCAGTCTCAAATAACCTAGACCT
GAGATCTCTCAGACACTGAGCCATCATCCAGAGAGCATATACCAGCTGAT
ATGAGGCTCCCCAACACATATACAGCAGAGGACTGCCTGGTCTGGCATCA
GTGAAAGAAGATGCATCTAACACTCAAGAGACTTGAGGCCCCAGGGAGTT
TAGAGTTCTGGTGGAATGGAGTAGGGGGTGGANTNATTTTTTTTNATTTT
GTTGAGGATAATTTTTAATTTGTTTAAAAATTTTATTTTTTAATAGCTGC
ACAATTTTACGTCGACCCTTCCTCACACCAATTGTATTTCCTCTCTCTAT
TTTTTCTCTATCCCTTTTATTTGCACCTCCACCCATTTTCTCCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_h19.b1 MSMg01no180_h19.b1 CHROMAT_FILE:
MSMg01no180_h19.b1 PHD_FILE: MSMg01no180_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:44 2005
         (320 letters)



>mm_chr10_123849073_123849791
          Length = 719

 Score =  536 bits (277), Expect = e-157
 Identities = 304/313 (97%), Gaps = 1/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaaggagcatctgaaataataacattatagagaaagtctagctgaatccagg 64
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 205 gaattcttcaaggagtatctgaaataataatattatagagaaagtctagctgaattcagg 264

                                                                       
Query: 65  attattttcttctgaccaaacagaaggtgattgtcacttgggataaggaaaatggatttt 124
           |||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attattttc-cctgaacaaacagaaggtgattgtcacttgggataaggaaaatggatttt 323

                                                                       
Query: 125 taacccagaattgctcctttctaaagaaaatacggagacaaagtgtggagcagggactga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taacccagaattgctcctttctaaagaaaatacggagacaaagtgtggagcagggactga 383

                                                                       
Query: 185 agggaagggcatctagtgatggccccacctggggacccatctcatatacagacaccaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agggaagggcatctagtgatggccccacctggggacccatctcatatacagacaccaaac 443

                                                                       
Query: 245 ccagacactattgttgatgctaagaagtgcttgctgacaggaggctaatatagctgcctc 304
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 ccagacactattgctgatgctaagaagtgcttgctgacaggaggctaatatagctgtctc 503

                        
Query: 305 ctgagaggctctg 317
           |||||||| ||||
Sbjct: 504 ctgagaggttctg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)