BAC Information

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BAC

Clone NameMSMg01-180I10
Chromosome10 (Build37)
Map Location 102,863,821 - 102,864,334
singlet/doubletsinglet
Overlap geneSlc6a15
Upstream geneLOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik
Downstream geneEG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180I10.T7 (MSMg01no180_i10.b1)MSMg01-180I10.TJ (MSMg01no180_i10.g1)
ACCAG373982AG373983
length712720
length of high quality
(start - end)		518 (43 - 560)476 (72 - 547)
definitionCHROMAT_FILE: MSMg01no180_i10.b1 PHD_FILE: MSMg01no180_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:47 2005CHROMAT_FILE: MSMg01no180_i10.g1 PHD_FILE: MSMg01no180_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTCAGCTGCCTTGTTAGGAGGTAAAAGAAGCTGTGTTCTTTGCAT
GTCTGGCTCTGAGTTTGTATTCCTTTTGTAGGAGCAAAAATGCTGATGTG
GGCGTCTGGTTTTCTTCTGTAGTTCAAAAGTGCTCTTTAATATTTGGAGC
CCTTGAGAACTTCCAGTGAACACCGCTTTAAATTCATAAATTTCAGCCAC
CTTAGAATTATTAAAATCCGCTTCAAGCCTTACATACTTAATAACCCAAA
CTATTTATATTCAGAGCATTGAAGAAAATGTTTCCTGGGTTCAGTGCAAC
TCATTCTTCTGAGTAAACTTCTGAAAACTACTTTCTAAGCCCACAGCTGG
TTATCACAGTTCCGCAGTTTGGTTTTAGTATGTACTTTAGAACTGATATA
ACCTTTAAATGGATCTAGTACTTAAAATTTCAGCATAAATCAACATTTTT
AGTTTGGGCTAAAGATCGGTGTTAAAATTCTAGTTTCTCCCCTCCCCTCC
CCTCCCCTTCCCCCTCCCTCCCCTCCCCTCCCTTCCTCTTCCCCTTTCTT
TTCTTTTCTCCCTCTTTCCCTTTTTTCTTTCCTCCTTTTCCTCTCTTTTC
CTTTTTTTTTCTTCTTCTTCCTTTTTTTTCCCCTCCTCTTTTCTTTTCTT
TTCCTTTCTCCN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTACTTCAGTTCTTGCTACCAGGTTCCTGC
CTGTAGTTCCTACACTGATAACCTACAATGGTAAAGTAAAATAAACTCTT
TCTTCCCCACATTGCTTTGGGTCATGTTGTTTTAATCACTGCTGTACAAA
GTCCAACTAACATATCCAGAGATGAACTACTTGTTATGCACACCAAAATT
GTGAACCCTTAAAATAGCATATACACAAGTCACACTAAACATAACCAGAA
TGTTGTATTTATATATTTATCTATGTATACAGAACAGTAATGACCAAAAT
ACAGGCGGCCCAACTCAATATTTCAGTGTTCAATTGGTTATGTAAATTTG
TCTTTAGCAATAGAACCTTGCCTTCAGTTTGTGAAGAACCACCTATAATC
TTAGAAATTTCCTAGTATTTTGAGACTTCTCAAGGAAACACTTTAGTCAA
GAACTCAGATGTAAACCATTGCCAGTAATGGAAATTTTATTTGATGGTGG
GAGATTTTCATTTAGTGCTTTATCTCCCCTGTTATTTGNCAATGTCATTT
ACGTGCCCTTCGTACATATATCTGTATATACATTACATAAATTTATTTTT
AGGAAGCATGTACTATATTAGGTTCTCAAACATTTCCTCAAATGGCCTTT
AATTTTAGTTGTCCTCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_i10.b1 MSMg01no180_i10.b1 CHROMAT_FILE:
MSMg01no180_i10.b1 PHD_FILE: MSMg01no180_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:47 2005
         (518 letters)



>mm_chr10_102863618_102864535
          Length = 918

 Score =  965 bits (499), Expect = 0.0
 Identities = 511/515 (99%), Gaps = 1/515 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttgtcagctgccttgttaggaggtaaaagaagctgtgttctttgcatgtctg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 ggaattctttgtcagctgccttgttaggaggtaaaagaagctgtgttctttgcatttctg 263

                                                                       
Query: 64  gctctgagtttgtattccttttgtaggagcaaaaatgctgatgtgggcgtctggttttct 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctctgagtttgtattcattttgtaggagcaaaaatgctgatgtgggcgtctggttttct 323

                                                                       
Query: 124 tctgtagttcaaaagtgctctttaatatttggagcccttgagaacttccagtgaacaccg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgtagttcaaaagtgctctttaatatttggagcccttgagaacttccagtgaacaccg 383

                                                                       
Query: 184 ctttaaattcataaatttcagccaccttagaattattaaaatccgcttcaagccttacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttaaattcataaatttcagccaccttagaattattaaaatccgcttcaagccttacat 443

                                                                       
Query: 244 acttaataacccaaactatttatattcagagcattgaagaaaatgtttcctgggttcagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acttaataacccaaactatttatattcagagcattgaagaaaatgtttcctgggttcagt 503

                                                                       
Query: 304 gcaactcattcttctgagtaaacttctgaaaactactttctaagcccacagctggttatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcaactcattcttctgagtaaacttctgaaaactactttctaagcccacagctggttatc 563

                                                                       
Query: 364 acagttccgcagtttggttttagtatgtactttagaactgatataacctttaaatggatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acagttccgcagtttggttttagtatgtactttagaactgatataacctttaaatggatc 623

                                                                       
Query: 424 tagtacttaaaatttcagcataaatcaacatttttagtttgggctaaagatcggtgttaa 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 tagtacttaaaatttcagcataaatcaacatttttagtttgggctaaagatctgtgttaa 683

                                              
Query: 484 aattctagtttctcccctcccctcccctccccttc 518
           ||||||||||||||||||||| |||||||||||||
Sbjct: 684 aattctagtttctcccctccc-tcccctccccttc 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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