BAC Information

Click to search

BAC

Clone NameMSMg01-181J09
Chromosome10 (Build37)
Map Location 54,173,327 - 54,173,833
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
Downstream geneLOC100041898, LOC382460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181J09.T7 (MSMg01no181_j09.b1)MSMg01-181J09.TJ (MSMg01no181_j09.g1)
ACCAG374720AG374721
length732732
length of high quality
(start - end)
511 (69 - 579)355 (77 - 431)
definitionCHROMAT_FILE: MSMg01no181_j09.b1 PHD_FILE: MSMg01no181_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:05 2005CHROMAT_FILE: MSMg01no181_j09.g1 PHD_FILE: MSMg01no181_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCATTTGCCGGATACTAAAGCTTATTACTAATTGAATACCTTAAC
ATCCAAGCTAGGAGGAAGGACTGGAGTGCATTAGTATGGTAGGCTGCTAT
CTGGCATGCTGTGCTTGATTCTGAATGTGTAAGTGCTAATCCCTTCTGCA
ACCAGCCTTCACTCCTGTGATGCAAAACATCAAACATTGTATCTGTCGGT
GCCATTTACTCTGTGATCTCTTCTTGTGACAAAACCCCAAGCCTACTTGC
ACCCATCCCACCAAATACCTACTCTTCTAGCTTACTGTAAGTAGATAACT
ACTTTAGCAGACTTATTTTGATTTGTTTTATTATATTTGTTATGCTTTAT
ATCCTATTATAAGTCAATGATTTCTTCTCCCTCTGATCTATAATATTGCC
AGCTTAACCTTCTGTTATATTATACTGGCTGCCCTCTAGCTCCTATTTTC
AACTATTAACTCCAAGTTTCCCTTATGTACTATTTCCTAAAGCTTCCTTC
CTTGTTCTTAATGATCAAACACACAAGTTCAGCTAGACTTATGAATAGTC
TGTTCAGTTGTTCATCCTGATATAGATATTCCCACTATTTTTGTGGTTTT
CCCCTACCTAATAGATGGAACATGCTTTTGCTCCGTTTATGGCAACTTAT
TAACTGACACCTCCACCTCCTGGTTATTCACT
AGATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCACTCACAAGAGAGATGGTCTT
GCCCTTCACTGGTTGAAGCACTCAGCCCAGTGGGCTTTGCACCTTGCTTG
GGCAGCACAATACAGCTGTCCTTGCTGGCATGGGTGTGCTCAACTCATTC
AAAGGCATGAGAGCTTGAAAGATGGCTCTGCTCATTGACTGCTGTGATAA
TGGATGAGCTAGCCGGGTCAATGTTGGAAAGCTTGCCTTGGTGGTGTAAA
TGCCAGAGAGATGGTGTGCTGACCAGCTTAGCTACCACCAAGGCTCTAAT
CTGGGGCTTTGAGTTGTCCCATCCCAATATCTATGAATAGTTGGAGAGCA
TGAAAGGGTCAAAACTGCAGATCCAAATCTGTATTATCTCATAGCAAAAA
CAGGATATCCCAGATGTGTCCTGCTGAGGATCCAGTATTGATAGCACAAC
CCACAGGCCTTGATCTAAACCAATGACTCATTGTAGCGAATATTTGCAAG
TATTGAAGTGTGCACAAAACGATATTCTGTGGCACAGACCGTGATACACT
ACTGTCTTTACAACAATTTTTTTTTCTTTTAAGGCAGATGTTGTTTGTTC
AAATGTTGTTTATGAACCAACCATAAGATGCACCTTCTTATTACAAAAAA
GACTTCTACCTTTCTCAGCGCGTTCTCCGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_j09.b1 MSMg01no181_j09.b1 CHROMAT_FILE:
MSMg01no181_j09.b1 PHD_FILE: MSMg01no181_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:05 2005
         (511 letters)



>mm_chr10_54173127_54174037
          Length = 911

 Score =  973 bits (503), Expect = 0.0
 Identities = 506/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaaagcttattactaattgaataccttaacatccaagctaggaggaaggactggagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 actaaagcttattactaattgaataccttaacatccaagctaggaggaaggactggagtg 648

                                                                       
Query: 61  cattagtatggtaggctgctatctggcatgctgtgcttgattctgaatgtgtaagtgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 647 cattagtatggtaggctgctatctggcatgctgtgcttgattctgaatgtgtacgtgcta 588

                                                                       
Query: 121 atcccttctgcaaccagccttcactcctgtgatgcaaaacatcaaacattgtatctgtcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 atcccttctgcaaccagccttcactcctgtgatgcaaaacatcaaacattgtatctgtcg 528

                                                                       
Query: 181 gtgccatttactctgtgatctcttcttgtgacaaaaccccaagcctacttgcacccatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtgccatttactctgtgatctcttcttgtgacaaaaccccaagcctacttgcacccatcc 468

                                                                       
Query: 241 caccaaatacctactcttctagcttactgtaagtagataactactttagcagacttattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 caccaaatacctactcttctagcttactgtaagtagataactactttagcagacttattt 408

                                                                       
Query: 301 tgatttgttttattatatttgttatgctttatatcctattataagtcaatgatttcttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgatttgttttattatatttgttatgctttatatcctattataagtcaatgatttcttct 348

                                                                       
Query: 361 ccctctgatctataatattgccagcttaaccttctgttatattatactggctgccctcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccctctgatctataatattgccagcttaaccttctgttatattatactggctgccctcta 288

                                                                       
Query: 421 gctcctattttcaactattaactccaagtttcccttatgtactatttcctaaagcttcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gctcctattttcaactattaactccaagtttcccttatgtactatttcctaaagcttcct 228

                                      
Query: 481 tccttgttcttaatgatcaaacacaca 507
           |||||||||||||||||||||||||||
Sbjct: 227 tccttgttcttaatgatcaaacacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)