Query= MSMg01no183_m03.b1 MSMg01no183_m03.b1 CHROMAT_FILE:
MSMg01no183_m03.b1 PHD_FILE: MSMg01no183_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:52 2005
(309 letters)
>mm_chr10_116186742_116187451
Length = 710
Score = 536 bits (277), Expect = e-157
Identities = 298/305 (97%), Gaps = 1/305 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggccactctcaggaagcagatgactcccagagtgagatcgtccttggaaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 509 gaattccaggccactctcaggaagcagatgactcccagagtgagatcgtccctggaaaat 450
Query: 65 acattatacagagcggggagacacagtcaaccctcccacgtgtctattcaaatgagttat 124
||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||
Sbjct: 449 acattatacagagaggggagacacagtcaactctcccatgtgtctattcgaatgagttat 390
Query: 125 tcttgcccctgagcacatgggcttcttcattctttgactttattttgttgaaaattccag 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 389 tcttgcccctgagcacatgggcttcttcattctttgactttactttgttgaaaattccag 330
Query: 185 tgactgccagtaatcccacaacctagatgctgctcaattctagatgaaataggtagtaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgactgccagtaatcccacaacctagatgctgctcaattctagatgaaataggtagtaat 270
Query: 245 tgtcaggctccataatggaattttcccatttctataagg-aaaaaataaggaagtgactc 303
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 269 tgtcaggctccataatggaattttcccatttctataaggaaaaaaataaggaagtgactc 210
Query: 304 aggtt 308
|||||
Sbjct: 209 aggtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 710
Length adjustment: 9
Effective length of query: 300
Effective length of database: 701
Effective search space: 210300
Effective search space used: 210300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_m03.g1 MSMg01no183_m03.g1 CHROMAT_FILE:
MSMg01no183_m03.g1 PHD_FILE: MSMg01no183_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:52 2005
(570 letters)
>mm_chr10_116053167_116054136
Length = 970
Score = 1075 bits (556), Expect = 0.0
Identities = 568/572 (99%), Gaps = 2/572 (0%)
Strand = Plus / Plus
Query: 1 ctgggcagtctaagtggcaagagatttgccctcccaaagtcaccctgttaatattgtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctgggcagtctaagtggcaagagatttgccctcccaaagtcaccctgttaatattgtgag 258
Query: 61 ggtagttactaagacaaggtcaccaaggaccatgaataatcagggaaacgtggctccatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggtagttactaagacaaggtcaccaaggaccatgaataatcagggaaacgtggctccatc 318
Query: 121 aaaagactcaaggaagttgccagtgacaaaccaggtaaaatggacaccaagaagcatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaaagactcaaggaagttgccagtgacaaaccaggtaaaatggacaccaagaagcatgct 378
Query: 181 gctaaaggaaattcaaaccagccatctcggaaatcaatgaggttcgagagaaaacagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gctaaaggaaattcaaaccagccatctcggaaatcaatgaggttcgagagaaaacagaaa 438
Query: 241 actaaaaagtatcagaaaagcagtacaggaacaaaaagataaatgctagaaaccacattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actaaaaagtatcagaaaagcagtacaggaacaaaaagataaatgctagaaaccacattg 498
Query: 301 tttttttgtttttttt-ctgttgctgaataacatatgcaaaaaaaaaaa-tccatacata 358
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 tttttttgtttttttttctgttgctgaataacatatgcaaaaaaaaaaaatccatacata 558
Query: 359 gcttcaatagcacacttgatcaagcaacacaaaggatcattgagattgaaggccggttct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcttcaatagcacacttgatcaagcaacacaaaggatcattgagattgaaggccggttct 618
Query: 419 gtgaaattactcaaaagagaatcaaaatgcaaagaggaaagaaagccactaacaaatgaa 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 619 gtgaaattactcaaaagagaatcaaaatgcaaagcggaaagaaagccactaacaaatgaa 678
Query: 479 aaaaaaaaaaatccccatctgcagaagaaaacaaatgcccagatcaataaagcccagagg 538
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaaaaaaaaattccccatctgcagaagaaaacaaatgcccagatcaataaagcccagagg 738
Query: 539 atcctgggtcaaatgaagaaacatcctcaaca 570
||||||||||||||||||||||||||||||||
Sbjct: 739 atcctgggtcaaatgaagaaacatcctcaaca 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
