BAC Information

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BAC

Clone NameMSMg01-185C12
Chromosome10 (Build37)
Map Location 38,729,287 - 38,729,591
singlet/doubletsinglet
Overlap geneLama4
Upstream geneLOC100040915
Downstream gene1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185C12.T7 (MSMg01no185_c12.b1)MSMg01-185C12.TJ (MSMg01no185_c12.g1)
ACCAG377233AG377234
length769745
length of high quality
(start - end)
308 (107 - 414)349 (397 - 745)
definitionCHROMAT_FILE: MSMg01no185_c12.b1 PHD_FILE: MSMg01no185_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:47 2005CHROMAT_FILE: MSMg01no185_c12.g1 PHD_FILE: MSMg01no185_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTGTTTTTTTTTTTTTTTTTTTCCCCTTTTCTTTTTTTTTCCCATT
TTNNNNATATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATAACAAGTTGTTTAAAAGAGAAAGGTGAAAAAA
GGCAGTGTTTGCACTCTGATATTTTAGAGACAGAGAGACTGCGTGTTGTG
CCTCTGACACCCATGGCTACTACACACAGAACCAACTCCTCAAAGGGGTT
TCTTAAGCATCTCAAGTGACAAAAAGACAGAACTGAGAATTACCTTGTTT
CTGTGCCTTAATAGTCACCTCAGCTACAAGGAGATGGCCTATGGTCTTAC
TGTGTTTTCTTCTACACAGACCTGTTTTGTCCATGTAACAAGGACTCAGA
CAAATCTGTCTCTATTTATATTCCCCCCCACCCCCCCCTTGTGGTTCAGA
TGTATGGTAGTAGGATACAACCCCAATGAATAATATGAGAAAGACACTGT
CCCAAGTTCAGGCTCATTTGGGATTTTTATTGCTTTTCCTTGCTCCAGAT
GCTGGTTCATCATTTCATGTTTTCTTTTTCCTCCATTAATTTTTCTTAAT
ATTTTCTGAGAGGTGGCTGAGCACATGACACAGTTTTAAAGACTATGAAG
GAACAAACTCTTGCCTACATGTTAAATTTTCTTTTTAAGAATTCTCATTG
ATCAGACTGTCTAATCCATATTCTAATTTATTTTCTGCTGCATAATTATA
TTTCAGAGCCATAACCAAN
CTTTCTCTNNNTCTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATGTTTCT
GGATAAGAAACAAGGAGTGGGGTGGAGAGAAACTGATTCCACTCCTTTAT
ACTGGTCTATAATAGGGCACATCTTTATATTCAACTGTAATGTTTCAGCA
GTTGTTGGAAATTCTGTCCTAATCCCAAGGAAAAATTCAGTTAATAGGGC
TGGAGAGATGGCTCAGTGGTTAAGAGCATTGGCTGCTCTTCCAGGGGTCC
TAAGTTCAATTCCCAGCAACCACATGGGGGCTCACAGCCATCTGCAATGG
GATCTGATACCCTCCTCTCTCTGATGTTCTCTTCTGCCATGCCCGCACAC
ATGCAAATAGAATGCCCCTATACATAAGTGAATAAATCTTTTAAATTCAT
TTAATAATTCAAAAATGAAATTAAAGCCAGCAACTAAAACATCAATTGTA
GAAGTCAAACGTTCTGACGTGGTGCAATTCAAAAATATACTTATTTGATA
CACGCGGAGGGATGGCATTAGGAAATATTAAAAATCATAGTTTGGTATAA
TTACAATGTAATGTTTCTATAATAAGTGAAAAAATTTGCACATACAGCAC
ACTGAAGTTAATAACCTTCAATCTCAAATCTGAGAGGAGATGTTTCTGGC
ATTGTGTATCTTGATAGTGTACAAAGTGGTGTGTGTGTGTGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_c12.b1 MSMg01no185_c12.b1 CHROMAT_FILE:
MSMg01no185_c12.b1 PHD_FILE: MSMg01no185_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:47 2005
         (308 letters)



>mm_chr10_38729084_38729791
          Length = 708

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcataacaagttgtttaaaagagaaaggtgaaaaaaggcagtgtttgcactctga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcataacaagttgtttaaaagagaaaggtgaaaaaaggcagtgtttgcactctga 263

                                                                       
Query: 64  tattttagagacagagagactgcgtgttgtgcctctgacacccatggctactacacacag 123
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattttagagacggagagactgcatgttgtgcctctgacacccatggctactacacacag 323

                                                                       
Query: 124 aaccaactcctcaaaggggtttcttaagcatctcaagtgacaaaaagacagaactgagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaccaactcctcaaaggggtttcttaagcatctcaagtgacaaaaagacagaactgagaa 383

                                                                       
Query: 184 ttaccttgtttctgtgccttaatagtcacctcagctacaaggagatggcctatggtctta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaccttgtttctgtgccttaatagtcacctcagctacaaggagatggcctatggtctta 443

                                                                       
Query: 244 ctgtgttttcttctacacagacctgttttgtccatgtaacaaggactcagacaaatctgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtgttttcttctacacagacctgttttgtccatgtaacaaggactcagacaaatctgt 503

                
Query: 304 ctcta 308
           |||||
Sbjct: 504 ctcta 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)