BAC Information

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BAC

Clone NameMSMg01-189C11
Chromosome10 (Build37)
Map Location 96,755,052 - 96,755,350
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik, EG667407
Downstream geneDcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189C11.T7 (MSMg01no189_c11.b1)MSMg01-189C11.TJ (MSMg01no189_c11.g1)
ACCAG379936AG379937
length751716
length of high quality
(start - end)
311 (58 - 368)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no189_c11.b1 PHD_FILE: MSMg01no189_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:03 2005CHROMAT_FILE: MSMg01no189_c11.g1 PHD_FILE: MSMg01no189_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGAAATTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCGAGGACTTTCCAGGGAGTATATAAATGCTAGG
GCCCTGAAAGGTAGTGTGGATTGCTGGTTAGTTCACTAGTTGTTGGTTGT
TATTGGTTGCTGTTGGTCATGGTTTCTTAGGTGGTCATGAGCAAATAATA
AGCAATGAAAAAAAAATGAAATTAGATCTCCTCATGATGAAGGTCAAACT
TGCCCTGAGGAACTCATGATCCCTAGGCCTGCAGGAAGCTGCCTAGTGAT
AACATTGCCCCTTTTCGACTCCTGACTTTATTCAGGAAACTTTCTTCTCT
CTCTCTCTCTCTCTCTCTCNCTTTCACTCTATATCTNTCCTCTCTATGTC
TCTCTCTCTCTCTCTCTCTCCCCCTCTCAAAAAAAAAAAAAAATCCTAGT
GGTGGGGAGTTAGTTCAGAAACTGTATAAATACAGTAGATATTGTTTTAA
CACAGACAAATCCCATTATTATTTAATGATATCTTTCAACTAACTCTGTT
TTTATCTATCTTATAACCTTTTATTTCAACCCACCATATCATATTACGTA
TTTATTATCATTTATAAATATCTCTGTGTTTTTTGACTCCTTTCTGATGC
TGTATTTGCCTCATCATTCCCCTCTTTCCTTTTTATACGTTGTTTTCCTC
CATTGCCATCATTTCTCGTGTTTTCCTTCCTTTTTGTATCATTGTTTCCT
C
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGGGCCATTTCTCCTAGAAATAACA
TATAGCCCAGGGCTTTAAAGGAAAATGACTTGAGGTGATGGCAGGTCCAG
GGAGAGAACTGGGAAGTGGGTTCTGGAATAGACTCAGGATCCCACTAAAT
GGAGCAAAGTGATATACTAATGTCCACCTGAGTGAGAGGCTTAGAACATT
CATTAGGCATTTAGCTCCAGCAAAGGAAAGAATCCAGTGGTCTAATCTTG
TGTTCAAAGTTAGCATTAGTAGGTGGAGGTCATGCTTTTGACAGGACATG
CACTGCCACTGTTTCCTGTGTACCCCACCCTTCAGTCAGCATTTAGGGTC
ATGAGGATAAGTGTTCTATAATTATGCTGTATTTTTCTCCAAATCCAATC
GTGATTCCTACAGTTTAGCCATAGGAACCAGCATTTACATCAGGCCACAA
CTTAAAAACCCTAAGAGATGTGACTATACTGAGGCATAATCCTGGTCTCA
AGTGACAGAGACCCTTTCCAGTTAACCAGCCCCAAGTCCTTTCCCAAGGT
TCTCAGTTGTCCCAAATGAGCCCCATGACCTCAGCAACCTTCAAATCAAG
AAAGATGTAATAGTTTAGAATAAGCAAGCTGGGCTACCCACAAGCTCTTC
ATGTATCCTTTTACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_c11.g1 MSMg01no189_c11.g1 CHROMAT_FILE:
MSMg01no189_c11.g1 PHD_FILE: MSMg01no189_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:03 2005
         (289 letters)



>mm_chr10_96754852_96755540
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 287/299 (95%), Gaps = 10/299 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggccatttctcctagaaataacatatagcccagggctttaaaggaaaatgacttga 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgggccatttctcctagaagtaacatatagcccagggctttaaaggaaaatgacttga 260

                                                                       
Query: 61  ggtgatggcaggtccagggagagaactgggaagtgggttctggaatagactcaggatccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgatggcaggtccagggagagaactgggaagtgggttctggaatagactcaggatccc 320

                                                                       
Query: 121 actaaatggagcaaagtgatatactaatgtccacctgagtgagaggcttagaacattcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaaatggagcaaagtgatatactaatgtccacctgagtgagaggcttagaacattcat 380

                                                                       
Query: 181 taggcatttagctccagcaaaggaaagaatccagtggtctaatcttgtgttcaaagtt-- 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 taggcatttagctccagcaaaggaaagaatccagtggtctaatcttgtgttcaaagtttt 440

                                                                      
Query: 239 --------agcattagtaggtggaggtcatgcttttgacaggacatgcactgccactgt 289
                   |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ctacggttagcattagtaggtggaggccatgcttttgacaggacatgcactgccactgt 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)