BAC Information

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BAC

Clone NameMSMg01-189P03
Chromosome10 (Build37)
Map Location 78,757,617 - 78,758,222
singlet/doubletsinglet
Overlap genenone
Upstream geneAgpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404
Downstream geneLOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189P03.T7 (MSMg01no189_p03.b1)MSMg01-189P03.TJ (MSMg01no189_p03.g1)
ACCAG380457AG380458
length731728
length of high quality
(start - end)
683 (45 - 727)249 (77 - 325)
definitionCHROMAT_FILE: MSMg01no189_p03.b1 PHD_FILE: MSMg01no189_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:03 2005CHROMAT_FILE: MSMg01no189_p03.g1 PHD_FILE: MSMg01no189_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACCTATTTCTATCACTTATCATGGATTTATGGAACCCTCCCAGTG
GTGGAATGTGGTTAGTCATTACATGGCCTGTCATTGAGTTAGAATTTTTG
CCCACTAAAGCAAACAATCCTTTTATATGCAAATGTATGTACTTGATTTG
GCAAAGATTGGTGATGTAACAATCTTCACTGTGTCCCTGCTGGAATGAAT
AACTCTTAGGAATTGTTTTACCTCAGTGATCCACTATTGCCTTTATTTGA
CAAGTGAAGTCCTTTTTGCCATAACTCCTAAAAGTGAGAGCTTAAGCACA
TGAGAGAACAATTATATTCCACACCCTAACAAAGAGATTAGCCTAGATCA
TATATGTGTATTGATTCAGACACTATTTTGTCTAGTGCACATATAGTGAT
CTTTTTTTTTTTTTAAACAGGGTTTCTCTGTCTATCTCTGGCTGTCCTGG
AACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCTCTTGCCT
CTGCCTCCCAAGTGCTGGTATTAAAGCCTTGCTTAACTATGATCCATTTG
GTGACAATGGGATAGTTTTCTCAGTTGTTCAATGCCAGGTCTATAAACAA
CAATCTCTAGTGGAGTATCATGTTAAAGAATAGTTTTTTTTTTCTTCTCA
AGGAAAGTTTTCTCTGTGTAGCTTGGCTGTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCTCACAGCAGAGATGAATG
TGCAATTTCAGCATAGAATTTAATCAATAATATTCTGAGTATTAAGTTTT
TGGAATCTTGGCCAGGTGGTGGTGGCCAAGCACTTGGGAGGCAGAGGCAG
GCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA
CAGCCAGAGTGATACACAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAA
AATTAACCAAAACAAAACAAAAAACTAAATAGTAATCTTGAAAGCAAACT
TTAATGACACTTCCTTTTTTTTTACCCCCCCCCCCCCTTAGCTTTGCTAT
AGCAGTTCCGTAATTGCCTTATTTCATACAATGAAACCAAAAAGCTATTT
CATTGTCCCAGTAGCAATTTCTGTGTTTGATCAGCTTTATGGCCCTATAA
AGCCTCTAAATTAATTTACTCACCATATTTTATTGCTAGGTTTTCTTCAA
CCCAGTTTATACCTCTGAATCATTACGTTAGACTACGAACTTAATTTACC
GCGTTTATGCTGAAAGACAGACAGCCAAAGATGCTTGGGATGCTTTTTAC
CCTCTTAATACCTTTTCTGCATAGAACTCTTTTAACTTATTCATATTCTT
AAAGAAATGTATTTATTTTTTATATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_p03.b1 MSMg01no189_p03.b1 CHROMAT_FILE:
MSMg01no189_p03.b1 PHD_FILE: MSMg01no189_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:03 2005
         (683 letters)



>mm_chr10_78757617_78758698
          Length = 1082

 Score = 1029 bits (532), Expect = 0.0
 Identities = 590/610 (96%), Gaps = 6/610 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacctatttct-atcacttatcatggatttatggaaccctcccagtggtggaa 62
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggaattctacctattt-tgatcacttatcatggatttatggaaccctcccagtggtggaa 548

                                                                       
Query: 63  tgtggttagtcattacatggcctgtcattgagttagaatttttgcccactaaagcaaaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgtggttagtcattacatggcctgtcattgagttagaatttttgcccactaaagcaaaca 488

                                                                       
Query: 123 atccttttatatgcaaatgtat-gtacttgatttggcaaagattggtgatgtaacaatct 181
           |||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||
Sbjct: 487 atccttttatatgcaaatgtatggtacttgatttggcaaggattggtgatataacaatct 428

                                                                       
Query: 182 tcactgtgtccctgctggaatgaataactcttaggaattgttttacctcagtgatccact 241
           |||||||||||||||||||||||||||  ||||||||| | |||||||||||||||||||
Sbjct: 427 tcactgtgtccctgctggaatgaataa--cttaggaatggctttacctcagtgatccact 370

                                                                       
Query: 242 attgcctttatttgacaagtgaagtcctttttgccataactcctaaaagtgagagcttaa 301
           |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||
Sbjct: 369 attgcctttatttgacaagtgaagtaatttttgccagaactcctaaaagtgagagcttaa 310

                                                                       
Query: 302 gcacatgagagaacaattatattccacaccctaacaaagagattagcctagatcatatat 361
           || |||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||
Sbjct: 309 gctcatgagagaacaattacattccacagtctaacaaagagattagcctagatcatatat 250

                                                                       
Query: 362 gtgtattgattcagacactattttgtctagtgcacatatagtgatcttttttttttttta 421
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 249 gtgtattgattcagacactattttgtctagtgcacatatagtgatc-ttattttttttta 191

                                                                       
Query: 422 aacagggtttctctgtctatctctggctgtcctggaactcactctgtagaccaggctggc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aacagggtttctctgtctatctctggctgtcctggaactcactctgtagaccaggctggc 131

                                                                       
Query: 482 ctcaaactcagaaatcctcttgcctctgcctcccaagtgctggtattaaagccttgctta 541
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 130 ctcgaactcagaaatcctcttgcctctgcctcccaagtgctggtattaaaggcttgctta 71

                                                                       
Query: 542 actatgatccatttggtgacaatgggatagttttctcagttgttcaatgccaggtctata 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  actatgatccatttggtgacaatgggatagttttctcagttgttcaatgccaggtctata 11

                     
Query: 602 aacaacaatc 611
           ||||||||||
Sbjct: 10  aacaacaatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space:   721456
Effective search space used:   721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)