BAC Information

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BAC

Clone NameMSMg01-191P19
Chromosome10 (Build37)
Map Location 51,874,769 - 51,875,053
singlet/doubletsinglet
Overlap geneRos1
Upstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2
Downstream geneDcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191P19.T7 (MSMg01no191_p19.b1)MSMg01-191P19.TJ (MSMg01no191_p19.g1)
ACCAG381815AG381816
length721740
length of high quality
(start - end)
315 (50 - 364)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no191_p19.b1 PHD_FILE: MSMg01no191_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:47 2005CHROMAT_FILE: MSMg01no191_p19.g1 PHD_FILE: MSMg01no191_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTAGATCAGGAGTTACCTTAAGCAAAATGAAAACAGAACA
AAACGCTGACACCATTGCATACACTAGCAGTATTTTGCTGAAAGGACCCT
GATATAGCTGTCTCTTGTGAGACTATGCTGGGGCCTAGCAAACACAGAAG
TGGATGCTCACAGTTAGCTATTGGATGGATCACAGGGCCCCCAATGGAGG
AGCTAGAGAAAATACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTG
GAACAACAATATGAACTAACCAGTACCTCCCGGAGCTCGTGTCTCTAGCT
GCATATGTATCTTATTATGGCCCACCCCCCCATCAGTGGAAAGAGAGGCC
CATTGGTCATGCAAACTTTATATGACACAGAATAAGGGAACGCCGGGGGG
GGGAAGTGGNAGTGGGTGGGTAAGGGAGTGGGGNTNNTTNTCNNNCTTTT
TTTTTNNTTTTNTTTTTTTTTTTTTTTTTTTTCTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTCCCTTCCT
CTCTCTCCTCTTTCTTCTTCTCCTGCCCCTTCTCTCTTCTTTTGTCCCTT
TCTCTCCTTTCCTTCTTCCCCTCTTTTCCTCCTTCCCCCCCCCTTTTCTT
TTCTCTTTACTCCCCCTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGAAAGACAGGGAGTCCTGCTG
AAAAATGGCCTTGCCGTCTGTGATGAGGAAGTCATTGTGTTCACAAGCAA
AGCTCTTCACAGTCACAAGGGGGACCCAAGGCAGGACCCGGTGGAAGGCA
GAGCCATCCAGAAACGTTGACATGAAGAGTTGCATGGTGTCATTGAAGTA
AATGATTCGCTTGGATTGGGGCTTTACTGCAAAGTCCTTTAATGTGCCAC
TCTCCACAATACGCACAGCTTTGGTGTCCCTGCCAGATGGCAAAGGGAGA
TTGACTCTGTATATGCCGTCTCTCACGAGATAAAAGACGTACCTGACAGA
GAGACAAAAAATGCCTAATATAAGTCAGCACAAGGGTGGCTTTGTAACCT
TCTGGGATAATTGCTGTGCTCAACCAGTACCATGTATCCCAGGACTTCCC
AAGGGGCAAAATGACAAAGGTCAGAGCTGGACATAAGCCCTACTGATGAC
AGTAGGAAGTTGAGAACTCTATCCTGTTTTATGATGAACTTTTAGGGACT
TTCTGAAGAATCAGAGTTAAAATTAAAAAGTATCTCTAAAGATGTTAGAG
GTACTAAACCTATACCTAGAGGTATAAAGCCTATTATGTGAAAATCACAT
AGCTAGGGCTGGAGAGATGGCCGAGTAAGTCAAGCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_p19.g1 MSMg01no191_p19.g1 CHROMAT_FILE:
MSMg01no191_p19.g1 PHD_FILE: MSMg01no191_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:47 2005
         (287 letters)



>mm_chr10_51874569_51875255
          Length = 687

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaaagacagggagtcctgctgaaaaatggccttgccgtctgtgatgaggaagtcatt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attgaaagacagggagtcctgctgaaaaatggccttgccatctgtgatgaggaagtcatt 260

                                                                       
Query: 61  gtgttcacaagcaaagctcttcacagtcacaagggggacccaaggcaggacccggtggaa 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttcacaagcaaagctcttcacagtcacaagggggacccaaggcaggacccggtggaa 320

                                                                       
Query: 121 ggcagagccatccagaaacgttgacatgaagagttgcatggtgtcattgaagtaaatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagagccatccagaaacgttgacatgaagagttgcatggtgtcattgaagtaaatgat 380

                                                                       
Query: 181 tcgcttggattggggctttactgcaaagtcctttaatgtgccactctccacaatacgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgcttggattggggctttactgcaaagtcctttaatgtgccactctccacaatacgcac 440

                                                        
Query: 241 agctttggtgtccctgccagatggcaaagggagattgactctgta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctttggtgtccctgccagatggcaaagggagattgactctgta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)