MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-192M20
Chromosome	10 (Build37)
Map Location	69,993,537 - 69,993,747
singlet/doublet	singlet
Overlap gene	1200015N20Rik
Upstream gene	Ank3, LOC100039734, 5730416O20Rik, Ccdc6, 2310015B20Rik, Slc16a9, LOC632955, LOC665398
Downstream gene	Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ank3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 9 mRNAs

name	LOC100039734 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039734
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	5730416O20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70557 MGI:1917807
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76551 MGI:1923801
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 218 ESTs, 2 Proteins

name	2310015B20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69563 MGI:1916813
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs

name	Slc16a9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66859 MGI:1914109
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC632955 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:632955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	1200015N20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71721 MGI:1918971
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665398 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665398
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Phyhipl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70911 MGI:1918161
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665429 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665429 MGI:3647372
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs

name	Bicc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83675 MGI:1933388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC622551 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622551
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	C730027H18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319572 MGI:2442303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tfam (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21780 MGI:107810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube2d1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216080 MGI:2384911
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665472 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665472
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Zcd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52637 MGI:1261855
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ipmk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69718 MGI:1916968
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039860 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039860
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Ank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256496 GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin 3, epithelial transcript_id : NM_146005.3

name	Ank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256494 GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin 3, epithelial transcript_id : NM_170688.2

name	Ank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256492 GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin 3, epithelial transcript_id : NM_170689.2

name	Ank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256502 GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin 3, epithelial transcript_id : NM_170690.2

name	Ank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256504 GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin 3, epithelial transcript_id : NM_170729.2

name	Ank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256490 GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin 3, epithelial transcript_id : NM_170728.2

name	Ank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256498 GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin 3, epithelial transcript_id : NM_170730.2

name	LOC100039734 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260915 GeneID:100039734
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to Ubtf protein transcript_id : XM_001473400.1

name	Ank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256500 GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin 3, epithelial transcript_id : NM_170687.3

name	Ank3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116256495 GeneID:11735 MGI:88026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin 3, epithelial transcript_id : NM_009670.4

name	5730416O20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260930 GeneID:70557 MGI:1917807
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730416O20 gene transcript_id : XM_001475149.1

name	Ccdc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388259 GeneID:76551 MGI:1923801
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 218 ESTs, 2 Proteins product : coiled-coil domain containing 6, transcript variant 1 transcript_id : XM_618775.3

name	2310015B20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388263 GeneID:69563 MGI:1916813
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs product : RIKEN cDNA 2310015B20 gene transcript_id : XM_483917.4

name	Slc16a9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386743 GeneID:66859 MGI:1914109
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 9 transcript_id : NM_025807.2

name	LOC632955 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94388265 GeneID:632955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC632955 transcript_id : XM_920293.2

name	1200015N20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343632 GeneID:71721 MGI:1918971
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1200015N20 gene transcript_id : NM_024244.3

name	Phyhipl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803106 GeneID:70911 MGI:1918161
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phytanoyl-CoA hydroxylase interacting protein-like transcript_id : NM_178621.3

name	EG665429 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388267 GeneID:665429 MGI:3647372
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs product : predicted gene, EG665429 transcript_id : XM_976882.1

name	Bicc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130749 GeneID:83675 MGI:1933388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bicaudal C homolog 1 (Drosophila) transcript_id : NM_031397.2

name	C730027H18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260918 GeneID:319572 MGI:2442303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA C730027H18 gene transcript_id : XM_001473569.1

name	Tfam (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803282 GeneID:21780 MGI:107810
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor A, mitochondrial transcript_id : NM_009360.3

name	Ube2d1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703837 GeneID:216080 MGI:2384911
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast) transcript_id : NM_145420.1

name	Zcd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372974 GeneID:52637 MGI:1261855
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, CDGSH-type domain 1 transcript_id : NM_134007.3

name	Ipmk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037170 GeneID:69718 MGI:1916968
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inositol polyphosphate multikinase transcript_id : NM_027184.1

name	Ank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256497 CCDS:CCDS23909.1 GeneID:11735 MGI:88026
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS] [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0050808 - synapse organization and biogenesis [Evidence IMP] codon_start : 1 note : isoform b is encoded by transcript variant 2; brain-specific ankyrin-G product : ankyrin 3, epithelial isoform b protein_id : NP_666117.2

name	Ank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25121946 GeneID:11735 MGI:88026
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS] [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0050808 - synapse organization and biogenesis [Evidence IMP] codon_start : 1 note : isoform c is encoded by transcript variant 3; brain-specific ankyrin-G product : ankyrin 3, epithelial isoform c protein_id : NP_733789.1

name	Ank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256493 GeneID:11735 MGI:88026
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS] [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0050808 - synapse organization and biogenesis [Evidence IMP] codon_start : 1 note : isoform d is encoded by transcript variant 4; brain-specific ankyrin-G product : ankyrin 3, epithelial isoform d protein_id : NP_733790.2

name	Ank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256503 CCDS:CCDS23910.1 GeneID:11735 MGI:88026
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS] [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0050808 - synapse organization and biogenesis [Evidence IMP] codon_start : 1 note : isoform e is encoded by transcript variant 5; brain-specific ankyrin-G product : ankyrin 3, epithelial isoform e protein_id : NP_733791.2

name	Ank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256505 GeneID:11735 MGI:88026
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS] [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0050808 - synapse organization and biogenesis [Evidence IMP] codon_start : 1 note : isoform h is encoded by transcript variant 8; brain-specific ankyrin-G product : ankyrin 3, epithelial isoform h protein_id : NP_733925.2

name	Ank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256491 GeneID:11735 MGI:88026
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS] [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0050808 - synapse organization and biogenesis [Evidence IMP] codon_start : 1 note : isoform a is encoded by transcript variant 1; brain-specific ankyrin-G product : ankyrin 3, epithelial isoform a protein_id : NP_733924.2

name	Ank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116256499 CCDS:CCDS23911.1 GeneID:11735 MGI:88026
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS] [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0050808 - synapse organization and biogenesis [Evidence IMP] codon_start : 1 note : isoform i is encoded by transcript variant 9; brain-specific ankyrin-G product : ankyrin 3, epithelial isoform i protein_id : NP_733926.2

name	LOC100039734 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260916 GeneID:100039734
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473450.1

name	Ank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86262153 CCDS:CCDS23912.1 GeneID:11735 MGI:88026
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS] [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0050808 - synapse organization and biogenesis [Evidence IMP] codon_start : 1 note : isoform f is encoded by transcript variant 6; brain-specific ankyrin-G product : ankyrin 3, epithelial isoform f protein_id : NP_733788.2

name	Ank3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22129789 GeneID:11735 MGI:88026
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS] [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA]; GO:0050808 - synapse organization and biogenesis [Evidence IMP] codon_start : 1 note : isoform g is encoded by transcript variant 7; brain-specific ankyrin-G product : ankyrin 3, epithelial isoform g protein_id : NP_033800.2

name	5730416O20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260931 GeneID:70557 MGI:1917807
definition	codon_start : 1 product : hypothetical protein LOC70557 protein_id : XP_001475199.1

name	Ccdc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82933144 GeneID:76551 MGI:1923801
definition	codon_start : 1 product : coiled-coil domain containing 6 isoform 1 protein_id : XP_618775.2

name	2310015B20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388264 GeneID:69563 MGI:1916813
definition	codon_start : 1 product : hypothetical protein LOC69563 protein_id : XP_483917.4

name	Slc16a9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229004 CCDS:CCDS23913.1 GeneID:66859 MGI:1914109
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 16 (monocarboxylic acid transporters), member 9 protein_id : NP_080083.2

name	LOC632955 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94388266 GeneID:632955
definition	codon_start : 1 product : hypothetical protein protein_id : XP_925386.2

name	1200015N20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29150265 GeneID:71721 MGI:1918971
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC71721 protein_id : NP_077206.2

name	Phyhipl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519957 CCDS:CCDS23914.1 GeneID:70911 MGI:1918161
definition	codon_start : 1 exception : mismatches in translation product : phytanoyl-CoA hydroxylase interacting protein-like protein_id : NP_848736.1

name	EG665429 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388268 GeneID:665429 MGI:3647372
definition	codon_start : 1 product : hypothetical protein protein_id : XP_981976.1

name	Bicc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13994223 CCDS:CCDS23915.1 GeneID:83675 MGI:1933388
definition	GO_function : GO:0003723 - RNA binding [Evidence ISS] codon_start : 1 note : polycystic kidney mutation of BALB/c origin; juvenile congenital polycystic kidney disease product : bicaudal C homolog 1 protein_id : NP_113574.1

name	C730027H18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260919 GeneID:319572 MGI:2442303
definition	codon_start : 1 product : hypothetical protein LOC319572 protein_id : XP_001473619.1

name	Tfam (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678303 CCDS:CCDS23916.1 GeneID:21780 MGI:107810
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : testis-specific HMG-box protein m-tsHMG product : transcription factor A, mitochondrial protein_id : NP_033386.1

name	Ube2d1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703838 GeneID:216080 MGI:2384911
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0031398 - positive regulation of protein ubiquitination [Evidence ISS]; GO:0006464 - protein modification [Evidence IEA]; GO:0000209 - protein polyubiquitination [Evidence ISS]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence ISS] codon_start : 1 product : ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog protein_id : NP_663395.1

name	Zcd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527228 CCDS:CCDS23917.1 GeneID:52637 MGI:1261855
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger, CDGSH-type domain 1 protein_id : NP_598768.1

name	Ipmk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037171 CCDS:CCDS23918.1 GeneID:69718 MGI:1916968
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004428 - inositol or phosphatidylinositol kinase activity [Evidence ISS]; GO:0050516 - inositol polyphosphate multikinase activity [Evidence IMP]; GO:0008440 - inositol trisphosphate 3-kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0046853 - inositol and derivative phosphorylation [Evidence IMP]; GO:0001841 - neural tube formation [Evidence IMP]; GO:0046854 - phosphoinositide phosphorylation [Evidence ISS] codon_start : 1 product : inositol polyphosphate multikinase protein_id : NP_081460.1

name	LOC665398 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665398
definition	number : 1 pseudo : _no_value

name	LOC622551 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:622551
definition	number : 1 pseudo : _no_value

name	LOC665472 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665472
definition	number : 1 pseudo : _no_value

name	LOC100039860 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039860
definition	number : 1 pseudo : _no_value

name	LOC100039860 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039860
definition	number : 2 pseudo : _no_value

clone name	MSMg01-419O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395D12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-515M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030M22
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-192M20.T7 (MSMg01no192_m20.b1)	MSMg01-192M20.TJ (MSMg01no192_m20.g1)
ACC	AG382357	AG382358
length	1,388	1,786
length of high quality (start - end)	226 (28 - 253)	---
definition	CHROMAT_FILE: MSMg01no192_m20.b1 PHD_FILE: MSMg01no192_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:41 2005	CHROMAT_FILE: MSMg01no192_m20.g1 PHD_FILE: MSMg01no192_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:41 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NTTACTATTGGGCGCTAACACTCCTAAGGGAGAGGATCCGCGGAATTCAC CTTAAACTTCTCAGGGCTGGGCTGGGGACGAGTTTGGGGGCTGCACACTT GCACTACCAAACAGGGGTCCCTGAGCACAGTCTTTAAAAAAAATCTCTGA AACGAAGCCAAAGTTTGTTCGAGAAACTTTGGTGAGACATTAGGATAGGG CATATGAAGATATGATAGGTGCTCCCCTTGAGAAACATCATTTTAGTGAC TATCATAAAATTAGGAAGATATATATTATTCTGAGAACCTCCATATAGCA CCTATCGGGTACACCTCGAGGTCTGTCATTCCACTAAGTTTTAACATTTT GGACCTCCTCTCCAGTGTTTATTCCCCTAGATTCCTACTGGATTTTTTTT TTTTTCTTATCTTATTGTACTTACACTTTCTCTTCTAAGGAAAGATAATT TTTTTTTTTTCCCCCCCCCCCCCCCAAAAAAGGNNCCCCCCCCAAAAAAA AAAAAAGGGGGCGTTTTTTTTTATTTTTCTTCTTCTTTTTTCCTCTTTTT TCTTTCCTCATTTCATTCTCTTCTATTATCTTATTTTTCTTATCTTTTTT ATCCTCTATCATTCTCCTCTCATATATTCCCCCCCTCTTTTTCTTTCACT CCTTATCTTCTATAATTCTTTTTTTTTTTACTTTTTCTCTTCTTCTATAT CCTTTCTCTCTTATATATTTGCTTATCTCTCTAATCCCTATTCTTTCTTT TTCCTATCTTTTTTCATTATTTTTTTTATTCCTTCCACTTTTTTCTTTTT TTCTTATCTTCCCTTCATTTATATACTTTCATTTATTTCTACCTTTTTTC CTTTTCTTTTTTTTTCTTTCCTCTCCTTTCTTCATCTGCTTTCTTTTTTT TATTTTCTCTCTTTTTTTTTTCATTTATTTATCTTCTTATCCTTCTCCTT CTTCTTTTACATTATTTTCTTTTTTTCTTTATTTCTATCTTCTTGCTTTT AAATTATTTCACTTATCCTTCATATTTTTTTTGTCTTCCCATATACCCTA CTCTTTCTCTCTTTTTCCATTTCTCTTTTTTTTTTTCTTACTTGTTCTTT ATATCTTTTATTCCTTTTTTATCTTTCATTTCTATTCCCTCTTCATTACT TATTTTTACTTTCTTCTCTTTCTTTTATCTTTCCTCATTTTCTTTTCTTT TACTTTCTATCTCCTCTTTCCTCATTTACTCTCCTTTTCTTTTCATTTGT ATATCTTTTTCCCTTTCTACTTCTTTCTTCTTCTCACTTATTTCCTATTT ACATCCTTTTCTCTTTTCTTATTTGTCCGTAATCTTTCTTTATTCTCTTC CATACTTGTTCATCTTCTATCTTTCTATTTTCTCTACG	NTAGGAGGAGGAGTACTGTGGATTTTCTCTGTGTTTATTTATAAATTTAT AATGTGGAATATTTATAGAATGGGGGGTCGGGGGGAGCCCCCTTTTAAAA GGGGGGGAATTGATTATATGGGATGCTCCCGCTTAGGGTGTGAGGTATCT CCTATATAAATAGAGGGGTTGTTAGCAGATGTAGTATGGATGTGAGTGTA GGTTTTCTGCTATAGAGTTGGTTTGTGGAGTGGATGAAGTGAATGTGTAG GAATATGGGTGTCTCTTGGAGGATGGATAATAGTGTATTATGTAATAGGC GAGATGTTCGTGATATTGAAAAAAGATGAGAAGGTGNAGTAGGAGGTTGT GATGTTTATATATTATGGATAAGATAAGGGAGTTGATATGATTTGATAGT GATGTGTGATGTTGATAATGTAAGTATAATTAAGTAGAGTTGTAGTGTAA TATTTAAAATATTTGTCGTAGTATTTTTTTGTGGGATAGGTTGTGTTAAG TTTAATGATGTATGAGTTGTTATAGTGTATGTGATGAGATAATTGTGTTT TTGGTGGGAATGAGGAATGATGAGTGTTTTTGTTTTTTTTTTTATATGTG TGTAAAGTAATANTGTGGTTTTTGTGGTGTTGTGGGAAGAGAGAGGGGGG ATTTTTTTTTTTTTTTTCTCCCCCCCCCCCCCCAGAAGGANGNNATNTCT CTTTCTTTAAAAAAAAAAAAAAAGATTTGTGGGTTTTTTTTNNTTTTTTT TTTTTTTCTTTTTCTTGCTTTTGCTTGCTGTCTTTGTTTTGTGTGTGTTG TGTGTGTTTTGTGTTGTGTGTTGTTTTTGGTTTGTGTTTGTGTGTTTGGT TTTGTTGGGTGGTTGTTTGTGGTTTGTGTGTGGTGTGGGTGTGGTGTTTG TTTTGTGTTGTGCGTGTGTCTTGTATGTTGTGTGTGTGGTGGTTTGGTGC GGTTGGTATGTGTTTGTGCTTGTGTGTTTCCTTGTTGTTTGTGTTGTGTT CTNTTTTGTTTTGTTTGGTGGTTTTTAGGTGTTGTTTATGTGTGGTGTGA TGTTATAGTAGTATTTATTAATGTTTTATTTGGTTATGAGTTTAGAAGAA ATATAATTTATAATGTGATAGGAATGTGATATATAATAGTAATGATAGAT TGGTGTTGTATAATATTGTATTGTGATTAGTGTGTGATGTTGAGTTGATT ATGTAGTAGTTGTGTGATATAGAAATTGTTGTACTATATGGTGATGTAGG AGTTGTTGTTGTGTAAGATTTGGTGTTGTATGTGTTTATGATATACATCT ATAGGGTATAGTAGTGAATATAAATGTGATATTTTATATTAGTAATATGT GTGTGTGTATGGTCATGTGGGTAATTATTAGTTGTGAGCGATATGAGAGA TAGGGAGGTGAATTCTATTGAAATTGTGTAAGTATTATTATGGTTAGATT GATATAGAATGGTTATGTATGGATGCAATGGAGGGTTAGTATGTAATGTG GGAGTATTAGTAATTTAGTTTGAGATATGAATTTGTATACTTTATATTAA TACTGGATTATACGGTTAATTTTTGAAATAGTTGTTAAAAAATAATGTAG TATGAGGATTGAGTAAAATTTAATGTTGTAGATATCAAATGTAAAAATAG TATGAGGATATAGTATTTAGTAGATTTTGTGTTGTAAAGATTGTGATGAT AGATGATAGTATAGTATGTAGTGAGTTATTTAGAAGAGTATGTTAAGTAT TATGTAAAGTGTATATACTATAATGGAGGAAGTAAG
quality values	Open. Hide. 0 3 6 6 6 9 10 6 8 10 8 9 12 11 8 8 8 8 8 8 17 8 8 8 8 8 8 19 22 33 33 36 36 42 47 42 42 42 48 39 39 39 37 39 37 28 33 21 21 20 23 37 32 29 29 32 43 41 47 33 33 33 23 18 10 11 11 25 25 33 36 43 37 39 30 32 32 44 43 48 48 48 48 37 42 37 33 30 30 31 31 34 34 34 39 36 41 41 41 41 41 41 29 25 19 10 10 10 19 24 37 42 42 46 44 44 43 47 25 24 13 13 13 18 18 29 42 42 36 32 32 41 42 42 42 37 35 44 33 43 43 50 50 50 50 47 47 50 50 43 52 52 52 50 43 35 35 35 43 43 52 52 57 57 57 57 52 43 43 32 35 29 42 42 38 38 24 16 16 16 11 15 18 27 32 38 32 32 32 32 26 13 13 13 26 32 43 43 35 33 35 43 43 50 50 43 43 35 35 35 43 43 57 44 44 42 36 28 23 27 38 32 28 37 37 37 42 42 41 41 18 18 15 21 18 23 23 28 37 37 48 57 44 40 28 28 25 25 27 28 25 21 15 14 12 22 21 21 14 14 16 21 12 11 11 15 12 12 20 23 12 11 11 12 22 21 28 28 28 37 39 32 28 20 20 20 24 24 21 13 8 8 8 8 8 8 8 8 8 10 15 22 32 37 30 19 12 12 9 9 9 11 12 12 15 12 14 21 16 13 11 11 11 11 18 10 10 9 10 10 10 10 8 9 10 9 9 9 16 12 9 9 9 9 10 19 19 19 20 15 11 10 10 15 15 17 17 10 10 10 15 12 12 11 8 8 8 8 11 8 10 8 8 8 8 8 8 8 8 8 10 8 8 8 6 6 8 8 10 10 10 11 11 16 15 24 30 30 29 31 19 19 11 8 8 8 8 8 8 8 8 8 8 8 8 10 10 9 9 9 11 11 11 11 10 10 9 8 8 8 8 8 8 9 9 10 10 9 11 11 12 8 8 6 6 8 8 8 8 9 9 11 21 21 32 37 43 29 21 13 13 13 19 27 39 32 21 21 21 19 21 26 18 15 11 9 11 9 8 8 8 6 3 0 0 3 7 6 8 8 8 8 7 7 7 7 12 13 14 18 14 14 13 12 10 10 12 11 13 10 6 8 6 6 8 10 13 12 10 8 8 6 7 10 12 9 8 8 6 6 8 8 8 8 6 6 8 8 11 15 10 10 8 8 6 6 6 6 8 8 8 6 6 10 8 10 10 8 8 8 8 6 6 9 11 11 15 15 18 10 9 9 9 8 8 9 9 9 9 10 10 12 12 9 10 8 6 6 6 8 8 8 8 8 8 8 8 8 8 8 10 9 9 11 13 21 8 8 8 8 8 8 12 12 9 9 8 8 10 8 8 8 8 8 10 10 10 12 13 9 9 9 9 9 8 10 7 6 8 8 9 10 9 10 10 10 8 8 8 8 8 8 8 8 9 8 8 8 8 6 6 8 8 8 9 8 11 8 8 10 8 10 9 10 8 9 8 8 8 6 6 8 7 8 11 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 10 8 10 8 10 9 12 8 8 8 8 6 6 8 8 10 11 9 9 8 8 6 6 8 8 11 12 15 15 10 8 8 8 8 8 10 10 11 13 12 15 10 10 8 7 8 8 12 8 8 8 8 8 8 9 9 12 8 12 9 8 8 8 8 7 6 8 8 8 10 10 10 10 10 11 11 9 9 8 10 6 6 8 8 8 8 8 8 8 8 8 6 6 8 8 13 10 11 10 9 8 8 8 10 8 8 6 6 8 10 8 8 6 6 8 8 8 8 6 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 9 9 9 9 9 11 15 16 13 12 10 9 9 9 9 9 10 12 12 12 16 16 23 23 22 11 8 6 7 10 10 10 8 8 8 9 8 8 10 8 8 8 9 9 8 8 8 7 8 6 6 6 6 8 10 10 10 8 10 10 8 8 8 10 9 7 10 8 10 8 8 6 6 8 8 10 10 8 8 8 8 8 10 8 8 6 6 8 8 8 8 8 8 8 8 8 12 11 11 8 8 8 10 10 8 8 7 6 6 8 8 8 8 6 6 8 8 8 8 8 8 8 8 10 11 11 11 10 8 10 6 6 8 8 8 10 10 10 9 9 10 9 9 9 9 9 8 8 8 6 6 10 8 8 8 8 6 8 6 6 8 8 10 11 11 12 9 9 10 10 8 8 6 6 8 10 10 8 8 8 8 8 8 8 8 8 10 9 9 9 9 10 10 10 6 6 6 7 10 10 10 8 8 8 8 9 9 9 11 11 8 8 8 8 8 8 8 8 8 8 8 12 8 8 8 8 10 16 10 10 8 8 8 8 8 8 8 8 9 12 13 16 11 12 11 11 11 13 10 8 8 10 10 10 11 9 8 8 8 8 13 10 8 8 8 8 8 8 8 10 10 10 8 8 6 6 8 8 10 8 9 9 9 10 10 11 8 8 6 6 8 8 13 10 10 10 10 10 10 10 11 12 9 9 9 8 8 8 8 8 6 6 8 8 6 6 10 8 13 10 11 10 8 8 8 8 10 11 10 11 11 11 8 8 7 6 8 6 8 8 8 10 9 9 12 12 11 15 10 8 8 8 15 12 12 12 10 9 9 8 8 8 11 10 10 10 10 10 10 9 8 8 8 8 8 10 13 11 11 8 10 8 8 8 8 6 6 8 8 9 9 8 8 10 10 12 8 7 8 8 7 7 8 8 10 8 8 8 8 8 6 6 6 6 8 8 8 8 8 10 8 6 6 8 8 6 8 9 8 8 6 6 6 6 8 8 10 10 10 9 9 9 9 13 10 10 10 10 9 9 9 9 9 12 12 13 12 8 8 8 8 8 8 10 10 11 6 6 6 7 12 12 8 8 6 7 10 12 8 8 8 8 8 8 8 8 9 9 9 11 9 9 7 6 8 6 6 6 6 8 8 7 8 8 9 9 11 10 9 10 13 13 10 8 8 8 8 8 10 8 9 8 8 6 8 8 8 8 8 11 10 10 8 6 6 8 6 6 8 8 11 8 10 8 8 8 8 6 6 6 6	Open. Hide. 0 3 6 6 6 7 7 7 6 7 8 9 9 8 8 8 8 8 6 6 7 10 9 11 9 8 8 8 8 8 8 6 6 6 8 9 9 10 15 11 6 6 6 15 8 10 11 9 8 10 19 9 9 9 7 7 8 10 10 6 6 8 8 10 13 15 8 8 8 8 6 9 10 17 8 8 6 6 6 8 8 8 11 11 10 10 8 8 7 10 11 11 10 6 7 9 9 6 7 8 8 8 8 17 10 10 8 8 8 8 8 8 8 8 8 8 9 9 9 9 10 9 9 9 8 8 8 10 8 8 10 8 8 8 8 10 12 10 9 10 13 10 10 10 6 7 10 8 7 7 10 8 9 9 8 8 8 8 8 6 6 6 6 8 10 10 10 6 6 8 6 6 8 6 6 6 6 11 11 8 8 6 6 8 7 6 6 6 8 7 6 8 8 11 11 8 8 9 7 8 8 10 11 11 10 10 10 11 11 11 10 8 8 8 8 8 8 8 6 6 8 12 15 13 10 10 14 11 15 13 10 8 8 9 9 10 10 13 15 12 8 8 6 6 11 11 10 12 12 14 10 14 9 8 8 10 8 10 8 8 8 8 8 8 8 8 8 8 8 7 6 6 6 8 8 8 8 10 10 8 8 8 8 8 6 6 7 6 8 12 8 10 8 8 8 8 8 8 6 6 6 8 8 8 9 8 8 6 6 6 10 15 21 18 13 9 9 9 11 12 15 18 15 12 15 10 9 8 8 8 8 8 8 8 8 3 0 3 6 6 8 8 8 8 8 8 10 10 10 10 10 8 8 6 9 8 8 8 6 6 8 12 13 15 15 15 14 9 9 10 10 9 9 10 10 10 9 9 10 9 9 9 8 10 6 6 8 12 12 12 7 6 8 8 10 11 8 10 10 8 8 8 8 8 8 8 6 6 8 8 8 8 12 11 6 6 8 6 6 8 8 8 8 6 6 8 8 8 8 8 8 8 7 8 8 8 6 6 11 11 8 8 8 8 10 10 22 19 10 9 9 9 9 9 10 10 8 8 6 6 8 8 11 10 8 8 8 8 8 7 7 10 7 9 9 9 12 12 14 11 17 12 11 14 10 10 8 8 8 8 11 8 10 7 6 8 8 8 6 6 7 10 8 8 8 8 14 13 17 18 17 11 11 11 16 10 10 11 12 9 9 9 9 9 9 13 10 10 11 8 8 8 12 12 9 10 10 8 8 8 8 8 8 12 8 8 8 9 9 8 8 8 8 8 7 7 7 8 11 8 10 10 11 10 8 9 10 10 10 8 8 6 6 8 8 10 11 12 12 16 11 11 10 23 23 35 31 25 24 16 11 12 10 10 9 9 11 10 10 10 13 13 10 8 8 6 6 8 8 8 8 3 0 3 9 8 8 8 8 8 8 8 12 10 11 10 10 9 8 8 8 6 7 8 10 8 8 8 11 13 8 12 12 12 10 8 9 12 12 10 10 10 7 7 9 11 11 11 15 17 17 19 26 23 10 8 8 8 8 10 11 11 32 19 19 19 19 19 28 31 19 12 9 9 6 8 6 6 8 3 0 3 0 0 3 3 0 3 9 9 9 9 10 11 11 11 11 11 11 13 18 32 24 16 16 13 13 13 11 19 19 8 6 6 6 6 6 6 6 6 6 6 8 10 21 27 35 28 16 29 3 0 0 3 10 7 11 8 8 8 10 9 9 10 8 8 6 8 8 8 9 6 6 6 6 8 8 6 8 11 11 21 10 9 9 8 8 6 6 8 8 6 9 13 15 19 10 10 9 8 10 8 8 8 10 10 8 8 8 8 13 13 9 8 8 8 12 10 19 10 8 6 6 8 6 6 8 8 8 8 10 10 13 18 16 12 13 11 10 10 10 10 10 15 20 21 8 8 6 6 8 8 8 9 8 11 8 9 9 9 11 11 11 12 12 11 11 8 8 8 8 8 8 8 10 8 10 10 6 7 8 6 7 8 10 13 11 11 8 8 8 8 9 18 12 10 10 9 9 8 10 8 8 8 6 8 10 11 9 10 9 9 11 11 10 8 8 8 8 12 13 9 10 10 15 15 10 8 8 6 6 8 8 8 8 8 8 8 12 13 16 13 10 10 9 9 6 6 7 6 8 8 10 10 10 16 10 10 9 9 9 9 9 8 6 6 6 7 8 8 10 10 10 8 8 8 6 6 6 6 8 8 8 8 8 11 8 8 8 8 8 9 9 12 8 6 6 6 8 8 11 15 18 19 11 11 11 13 11 9 9 3 0 3 11 11 13 12 12 10 10 10 10 8 10 8 8 8 8 9 9 10 10 10 11 7 8 8 8 8 11 10 12 9 8 10 8 9 11 11 12 12 11 11 10 21 10 10 10 10 11 10 11 11 10 8 8 10 10 7 6 8 6 6 8 8 8 8 13 10 10 9 9 10 10 8 8 8 8 8 8 8 6 6 8 8 10 10 10 11 15 8 8 8 8 10 8 9 9 7 8 6 8 8 8 9 8 8 8 10 8 8 10 8 8 8 8 8 8 8 8 8 12 19 6 6 6 6 10 10 10 10 8 8 10 8 8 8 8 8 8 8 8 11 8 8 8 8 8 9 10 10 10 9 8 8 6 7 6 7 8 8 8 6 6 8 8 8 6 6 8 8 8 7 6 8 8 10 8 9 9 9 10 10 10 8 8 10 8 8 8 6 6 8 8 8 8 6 6 8 10 10 10 10 8 8 8 15 8 8 8 15 11 9 6 8 6 6 8 7 9 10 8 8 8 8 8 8 9 11 12 10 9 8 8 10 11 12 11 8 8 8 11 8 10 10 11 11 12 8 8 6 6 8 8 9 9 10 8 7 7 8 8 10 9 8 8 6 6 8 8 10 8 8 8 8 10 10 10 10 10 9 10 10 8 8 8 8 10 8 8 8 8 8 8 8 8 6 6 7 8 9 9 8 8 8 8 6 6 6 6 8 10 10 9 9 8 8 6 6 8 8 12 12 12 12 8 8 8 8 8 6 7 7 8 9 9 9 11 9 9 9 13 10 8 8 8 8 8 8 6 6 8 8 10 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 6 6 8 6 7 8 8 8 8 8 9 10 10 10 10 9 9 10 8 8 7 7 7 8 8 8 8 6 6 8 8 8 8 8 8 8 11 11 11 11 11 10 9 9 9 9 9 13 10 9 8 8 8 8 8 8 10 8 8 6 6 8 10 10 10 10 7 6 8 8 8 8 8 8 9 7 8 8 8 8 10 7 6 8 8 12 8 8 6 6 8 8 8 8 6 6 8 8 12 10 8 6 6 6 8 8 8 6 6 8 8 8 10 10 8 8 8 10 10 11 12 10 10 16 16 16 11 10 6 6 8 8 6 6 8 8 8 8 13 12 8 10 9 9 9 9 9 10 9 9 8 10 6 6 8 12 17 10 10 10 9 8 8 6 6 8 6 6 8 8 10 10 8 8 6 6 8 8 8 9 9 8 8 8 8 8 10 8 8 8 8 8 8 6 6 6 6 6 6 8 12 11 13 10 8 8 8 8 8 8 8 8 8 8 9 9 13 10 10 8 8 9 8 11 8 8 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 8 9 11 12 8 8 9 7 10 8 8 8 6 6 8 8 11 10 10 8 6 6 6 8 8 10 13 10 11 11 11 12 12 11 8 8 6 7 8 8 8 8 8 10 10 7 7 8 8 8 9 8 8 8 8 8 6 8 8 8 8 8 10 8 8 8 6 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 10 10 12 12 9 11 8 8 8 8 8 6 6 8 6 8 8 11 11 9 6 8 8 8 8 8 8 8 6 6 7 6 8 8 8 10 10 11 6 6 8 8 8 9 9 9 11 10 11 11 10 8 8 6 6 8 10 8 15 12 8 8 10 15 10 10 8 8 6 6 8 8 8 8 8 10 8 10 6 6 8 8 8 10 10 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no192_m20.b1 MSMg01no192_m20.b1 CHROMAT_FILE:
MSMg01no192_m20.b1 PHD_FILE: MSMg01no192_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:41 2005
         (226 letters)



>mm_chr10_69993322_69993947
          Length = 626

 Score =  400 bits (207), Expect = e-116
 Identities = 210/211 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcaccttaaacttctcagggctgggctggggacgagtttgggggctgcacacttgc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaattcaccttaaacttctcagggctgggctggggacgagtttgggggctgcacacttgc 367

                                                                       
Query: 76  actaccaaacaggggtccctgagcacagtctttaaaaaaaatctctgaaacgaagccaaa 135
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 actagcaaacaggggtccctgagcacagtctttaaaaaaaatctctgaaacgaagccaaa 307

                                                                       
Query: 136 gtttgttcgagaaactttggtgagacattaggatagggcatatgaagatatgataggtgc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtttgttcgagaaactttggtgagacattaggatagggcatatgaagatatgataggtgc 247

                                          
Query: 196 tccccttgagaaacatcattttagtgactat 226
           |||||||||||||||||||||||||||||||
Sbjct: 246 tccccttgagaaacatcattttagtgactat 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information