BAC Information

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BAC

Clone NameMSMg01-193O18
Chromosome10 (Build37)
Map Location 118,288,400 - 118,407,093
singlet/doubletdoublet
Overlap geneDyrk2, LOC668223
Upstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850
Downstream geneLOC100042861, LOC674417, Cand1, Grip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193O18.T7 (MSMg01no193_o18.b1)MSMg01-193O18.TJ (MSMg01no193_o18.g1)
ACCAG383036AG383037
length757753
length of high quality
(start - end)		558 (75 - 632)647 (75 - 721)
definitionCHROMAT_FILE: MSMg01no193_o18.b1 PHD_FILE: MSMg01no193_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:38 2005CHROMAT_FILE: MSMg01no193_o18.g1 PHD_FILE: MSMg01no193_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,288,400 - 118,288,955)(118,406,682 - 118,407,093)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAATCCGCG
GAATTCCATTGAGACCTTCCCGAAAACACCCCCTTTGAAGCTTTGTATCC
AGGGCCACTACAAATGACCTTCTAAAGAAATATAAACTCCTCCTGGTCAT
TGTTAGTGTTGTTGTTTTGATAAACCAAGCGCAACAAGCATGACTACTGT
GTTCTATCCTTCAAGTGCCTTTATCAAACCTTATCTGAAATCTCTCTTTC
CATGGTTTCCATGAGAGACTGAAAATATTAAATGACAAACTTCAGAAATA
AGTAATTAAATTTTTTTAAACTGCATACCACACTGAGTAGAATCTCATAC
TATACCACCTGGGCCATGGATACATTCCATACATCCAAGGTATGCATGCT
CATATACATTAAACACCAATCGCACGCAACCGCCAGGGTTATCAGGTCAG
TTTTCACAGACTCACGAGTAGCATCCATTCTTGCAATAACAGCCTCAAAC
AGTCAACATTGTACTGATCCCAAACATTTTATCATTTTATCTCACTGTAT
GTTATTCTAGTTCATTGTTAGCCGATTGTCACCTCTTTCTGAGCCTACTT
TATGTAAATATAGTGTTCAGTGTTATCAACTGCTTCAGATATTCAGGAAA
CGCTGAAGACATTCCTGCAGTTAACAGAGCCCTCGGACAGGATTCTATTC
TCTTATATTATTTCTTCTCCCCACTTTCTTTTTCTTCTCCTTCTTTCTTA
CTCTACG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTGCATCCATGCCTTGGATATCTT
TTAGGCTCTGCTTCAATAAGGCTATCACCTGATCGCACTCTCTAACTCTA
TCCATGAATGTCATGGGCATTTTATCTGTAGGTTTCCTAAACACCACGTT
AGAGTGCAGGACACTGCTTCCTCTCAGAGCACAACTGTGTATCTTTTGGT
ACCTCCCTGTTTTAATTAGGGTAGATTAGATAGGAGACGATCCTGGAGAC
AGAAGCCTCAAGATCAAGGTCTAGGTCAGTAGTGAGTCCTCTCCCCTAGA
CTTTCAGAAATCTGCCTTCTCTGTGTATCATTACATGGCAAAGAAGAAGT
GGTGGAAAGAGAGAGGGCCTCCTTCCTCTTGTCTTAAAAAGATGCTCACT
CTGCCAAGGGGCCCTCACTCTTGTGAACTCATCAAAAGCTAACTACCGTG
AAGTCCTCACCTCCAGACATTGTCACTCAGAGTGTGTTAGGCACTCAATG
TGAAAATGTGGGATAGACACTCACACAGCTGCTAGCAGTGCCCAAGGGGC
GTCCTTGATCACCAGGAGTTCAGCACTCATATGCCCACAGCCTGAAAGCA
AGAGGTACTTGGAAGCTACCCCCAAAAGATGAGAGGAGCTAACACAGGCA
TGCTTCTGTTTCAGCCCAAGATAGACAGTTCAAAGACATGTTTTATGAGA
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_o18.b1 MSMg01no193_o18.b1 CHROMAT_FILE:
MSMg01no193_o18.b1 PHD_FILE: MSMg01no193_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:38 2005
         (558 letters)



>mm_chr10_118288200_118289157
          Length = 958

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaccccctttgaagctttgtatccagggccactacaaatgaccttctaaagaaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaccccctttgaagctttgtatccagggccactacaaatgaccttctaaagaaatata 260

                                                                       
Query: 61  aactcctcctggtcattgttagtgttgttgttttgataaaccaagcgcaacaagcatgac 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcctcccggtcattgttagtgttgttgttttgataaaccaagcgcaacaagcatgac 320

                                                                       
Query: 121 tactgtgttctatccttcaagtgcctttatcaaaccttatctgaaatctctctttccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgtgttctatccttcaagtgcctttatcaaaccttatctgaaatctctctttccatg 380

                                                                       
Query: 181 gtttccatgagagactgaaaatattaaatgacaaacttcagaaataagtaattaaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttccatgagagactgaaaatattaaatgacaaacttcagaaataagtaattaaatttt 440

                                                                       
Query: 241 tttaaactgcataccacactgagtagaatctcatactataccacctgggccatggataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaactgcataccacactgagtagaatctcatactataccacctgggccatggataca 500

                                                                       
Query: 301 ttccatacatccaaggtatgcatgctcatatacattaaacaccaatcgcacgcaaccgcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct: 501 ttccatacatccaaggtatgcatgctcatatacattaaacaccaatcgtatgtaaccgcc 560

                                                                       
Query: 361 agggttatcaggtcagttttcacagactcacgagtagcatccattcttgcaataacagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggttatcaggtcagttttcacagactcacgagtagcatccattcttgcaataacagcc 620

                                                                       
Query: 421 tcaaacagtcaacattgtactgatcccaaacattttatcattttatctcactgtatgtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaacagtcaacattgtactgatcccaaacattttatcattttatctcactgtatgtta 680

                                                                       
Query: 481 ttctagttcattgttagccgattgtcacctctttctgagcctactttatgtaaatatagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctagttcattgttagccgattgtcacctctttctgagcctactttatgtaaatatagt 740

                           
Query: 541 gttcagtgttatcaac 556
           ||||||||||||||||
Sbjct: 741 gttcagtgttatcaac 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no193_o18.g1 MSMg01no193_o18.g1 CHROMAT_FILE:
MSMg01no193_o18.g1 PHD_FILE: MSMg01no193_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:38 2005
         (647 letters)



>mm_chr10_118406682_118407728
          Length = 1047

 Score =  797 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgcatccatgccttggatatcttttaggctctgcttcaataaggctatcacctgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atttgcatccatgccttggatatcttttaggctctgcttcaataaggctatcacctgatc 353

                                                                       
Query: 61  gcactctctaactctatccatgaatgtcatgggcattttatctgtaggtttcctaaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gcactctctaactctatccatgaatgtcatgggcattttatctgtaggtttcctaaacac 293

                                                                       
Query: 121 cacgttagagtgcaggacactgcttcctctcagagcacaactgtgtatcttttggtacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cacgttagagtgcaggacactgcttcctctcagagcacaactgtgtatcttttggtacct 233

                                                                       
Query: 181 ccctgttttaattagggtagattagataggagacgatcctggagacagaagcctcaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ccctgttttaattagggtagattagataggagacgatcctggagacagaagcctcaagat 173

                                                                       
Query: 241 caaggtctaggtcagtagtgagtcctctcccctagactttcagaaatctgccttctctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 caaggtctaggtcagtagtgagtcctctcccctagactttcagaaatctgccttctctgt 113

                                                                       
Query: 301 gtatcattacatggcaaagaagaagtggtggaaagagagagggcctccttcctcttgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gtatcattacatggcaaagaagaagtggtggaaagagagagggcctccttcctcttgtct 53

                                                               
Query: 361 taaaaagatgctcactctgccaaggggccctcactcttgtgaactcatcaaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  taaaaagatgctcactctgccaaggggccctcactcttgtgaactcatcaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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